Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21730

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
4,153,767	+				-0.6
4,154,053	+	yjfP	LU632_RS21730	0.29	-0.6
4,154,054	-	yjfP	LU632_RS21730	0.30	-1.6
4,154,058	+	yjfP	LU632_RS21730	0.30	+1.5
4,154,059	-	yjfP	LU632_RS21730	0.30	+1.4
4,154,109	-	yjfP	LU632_RS21730	0.37	+1.9
4,154,109	-	yjfP	LU632_RS21730	0.37	-0.6
4,154,320	+	yjfP	LU632_RS21730	0.65	-1.6
4,154,412	-	yjfP	LU632_RS21730	0.77	+3.4
4,154,473	+	yjfP	LU632_RS21730	0.85	-2.4
4,154,653	-				-0.6
4,154,685	+				+0.3
4,154,685	+				-0.7
4,154,685	+				+1.3
4,154,686	-				-2.6
4,154,686	-				-0.2
4,154,686	-				+1.2
4,154,697	+				-0.1
4,154,697	+				-0.1
4,154,698	-				+0.7
4,154,753	+				+1.7
4,154,753	+				+0.3
4,154,768	+				+0.5
4,154,839	+				-1.5
4,154,840	-				+1.9
4,154,845	+				+0.3
4,154,846	-				-1.9
4,154,899	+				+0.7
4,154,899	+				+1.8
4,154,899	+				-1.1
4,154,899	+				+0.3
4,154,899	+				-0.5
4,154,900	-				+0.3
4,154,900	-				-1.1
4,154,904	+				+2.6
4,154,904	+				-0.1
4,154,905	-				+0.0
4,154,921	-				-2.8
4,154,921	-				-0.9
4,154,924	+				-1.6
4,154,971	+				-0.8
4,154,972	-				+2.6
4,154,972	-				-0.1
4,154,991	+				+0.1
4,155,101	+				-0.1
4,155,121	-				+0.2
4,155,141	-				+1.3
4,155,145	-				+0.9
4,155,232	-		LU632_RS21735	0.24	-2.5
4,155,243	+		LU632_RS21735	0.26	+0.4
4,155,245	+		LU632_RS21735	0.26	-1.2
4,155,246	-		LU632_RS21735	0.26	+0.4
4,155,246	-		LU632_RS21735	0.26	-0.8
4,155,286	-		LU632_RS21735	0.33	-0.2
4,155,319	-		LU632_RS21735	0.39	+1.4
4,155,319	-		LU632_RS21735	0.39	+0.9
4,155,507	+		LU632_RS21735	0.71	-2.4
4,155,507	+		LU632_RS21735	0.71	+0.6
4,155,511	-		LU632_RS21735	0.72	+1.5
4,155,543	+		LU632_RS21735	0.78	+0.3