Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21615 and LU632_RS21620 are separated by 93 nucleotides LU632_RS21620 and LU632_RS21625 are separated by 225 nucleotides LU632_RS21625 and LU632_RS21630 are separated by 150 nucleotides
LU632_RS21615: LU632_RS21615 - IS6 family transposase, at 4,134,836 to 4,135,009
_RS21615
LU632_RS21620: LU632_RS21620 - acyl-homoserine-lactone synthase, at 4,135,103 to 4,135,705
_RS21620
LU632_RS21625: LU632_RS21625 - IS6 family transposase, at 4,135,931 to 4,136,128
_RS21625
LU632_RS21630: LU632_RS21630 - helix-turn-helix domain-containing protein, at 4,136,279 to 4,136,703
_RS21630
Position (kb) 4135
4136
4137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4134.958 kb on + strand, within LU632_RS21615 at 4134.958 kb on + strand, within LU632_RS21615 at 4134.958 kb on + strand, within LU632_RS21615 at 4135.018 kb on + strand at 4135.182 kb on - strand, within LU632_RS21620 at 4135.262 kb on - strand, within LU632_RS21620 at 4135.262 kb on - strand, within LU632_RS21620 at 4135.283 kb on + strand, within LU632_RS21620 at 4135.284 kb on - strand, within LU632_RS21620 at 4135.295 kb on + strand, within LU632_RS21620 at 4135.296 kb on - strand, within LU632_RS21620 at 4135.320 kb on - strand, within LU632_RS21620 at 4135.545 kb on + strand, within LU632_RS21620 at 4135.545 kb on + strand, within LU632_RS21620 at 4135.546 kb on - strand, within LU632_RS21620 at 4135.711 kb on - strand at 4135.711 kb on - strand at 4135.824 kb on + strand at 4135.824 kb on + strand at 4135.825 kb on - strand at 4135.825 kb on - strand at 4135.825 kb on - strand at 4135.832 kb on - strand at 4135.839 kb on + strand at 4135.839 kb on + strand at 4135.840 kb on - strand at 4135.840 kb on - strand at 4135.982 kb on + strand, within LU632_RS21625 at 4136.013 kb on + strand, within LU632_RS21625 at 4136.057 kb on - strand, within LU632_RS21625 at 4136.161 kb on - strand at 4136.199 kb on + strand at 4136.199 kb on + strand at 4136.199 kb on + strand at 4136.593 kb on - strand, within LU632_RS21630 at 4136.947 kb on - strand at 4136.947 kb on - strand at 4137.067 kb on + strand at 4137.067 kb on + strand at 4137.092 kb on + strand at 4137.093 kb on - strand at 4137.101 kb on + strand at 4137.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 4,134,958 + LU632_RS21615 0.70 -2.3 4,134,958 + LU632_RS21615 0.70 -1.0 4,134,958 + LU632_RS21615 0.70 +0.5 4,135,018 + +0.5 4,135,182 - LU632_RS21620 0.13 -2.5 4,135,262 - LU632_RS21620 0.26 -0.1 4,135,262 - LU632_RS21620 0.26 -1.7 4,135,283 + LU632_RS21620 0.30 -1.8 4,135,284 - LU632_RS21620 0.30 +2.3 4,135,295 + LU632_RS21620 0.32 -0.5 4,135,296 - LU632_RS21620 0.32 +1.1 4,135,320 - LU632_RS21620 0.36 +1.3 4,135,545 + LU632_RS21620 0.73 -0.7 4,135,545 + LU632_RS21620 0.73 -0.1 4,135,546 - LU632_RS21620 0.73 +0.9 4,135,711 - +2.0 4,135,711 - -0.3 4,135,824 + -0.7 4,135,824 + -1.2 4,135,825 - -0.1 4,135,825 - -1.2 4,135,825 - +0.4 4,135,832 - -2.9 4,135,839 + -3.3 4,135,839 + -0.9 4,135,840 - +0.9 4,135,840 - +0.0 4,135,982 + LU632_RS21625 0.26 +0.9 4,136,013 + LU632_RS21625 0.41 -2.7 4,136,057 - LU632_RS21625 0.64 -1.5 4,136,161 - +0.8 4,136,199 + -0.2 4,136,199 + -1.1 4,136,199 + +0.3 4,136,593 - LU632_RS21630 0.74 +3.3 4,136,947 - +0.9 4,136,947 - -0.1 4,137,067 + +0.1 4,137,067 + -0.2 4,137,092 + -0.5 4,137,093 - -0.5 4,137,101 + -2.2 4,137,117 + +0.1
Or see this region's nucleotide sequence