Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21500

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
4,111,957	+	panF	LU632_RS21495	0.32	+1.9
4,111,957	+	panF	LU632_RS21495	0.32	+0.4
4,111,977	-	panF	LU632_RS21495	0.34	+0.3
4,111,985	+	panF	LU632_RS21495	0.34	+1.1
4,111,986	-	panF	LU632_RS21495	0.34	-0.7
4,112,094	+	panF	LU632_RS21495	0.42	-0.2
4,112,098	+	panF	LU632_RS21495	0.42	-0.5
4,112,099	-	panF	LU632_RS21495	0.42	-0.6
4,112,222	+	panF	LU632_RS21495	0.51	-1.4
4,112,223	-	panF	LU632_RS21495	0.51	-1.2
4,112,273	-	panF	LU632_RS21495	0.54	+0.4
4,112,284	-	panF	LU632_RS21495	0.55	-0.5
4,112,336	+	panF	LU632_RS21495	0.59	+1.8
4,112,429	+	panF	LU632_RS21495	0.65	+3.1
4,112,430	-	panF	LU632_RS21495	0.65	+1.2
4,112,430	-	panF	LU632_RS21495	0.65	-0.1
4,112,430	-	panF	LU632_RS21495	0.65	-0.4
4,112,481	+	panF	LU632_RS21495	0.69	-0.1
4,112,631	-	panF	LU632_RS21495	0.79	-0.2
4,112,701	-	panF	LU632_RS21495	0.84	-0.7
4,112,792	-				+0.4
4,112,877	-				+1.3
4,112,959	+				-2.0
4,112,959	+				-0.8
4,112,959	+				+0.6
4,113,038	-	prmA	LU632_RS21500	0.10	-0.7
4,113,051	-	prmA	LU632_RS21500	0.12	+5.6
4,113,469	+	prmA	LU632_RS21500	0.59	-0.5
4,113,756	+				-1.1
4,113,756	+				+3.0
4,113,887	-				-2.5
4,113,892	+				-1.4
4,113,899	-				-1.8
4,113,917	+				+0.4
4,113,918	-				+0.2
4,113,959	-				+0.3
4,113,966	+				-1.4
4,114,117	+		LU632_RS21505	0.20	-2.5
4,114,118	-		LU632_RS21505	0.21	-1.1
4,114,118	-		LU632_RS21505	0.21	+0.1
4,114,134	+		LU632_RS21505	0.23	-0.2
4,114,218	+		LU632_RS21505	0.34	+0.1
4,114,218	+		LU632_RS21505	0.34	+0.2
4,114,221	+		LU632_RS21505	0.35	-0.7
4,114,221	+		LU632_RS21505	0.35	-0.2
4,114,221	+		LU632_RS21505	0.35	-0.7
4,114,222	-		LU632_RS21505	0.35	+0.2
4,114,222	-		LU632_RS21505	0.35	-2.3
4,114,222	-		LU632_RS21505	0.35	+0.3
4,114,224	+		LU632_RS21505	0.35	+0.6
4,114,224	+		LU632_RS21505	0.35	+0.2
4,114,225	-		LU632_RS21505	0.35	-0.7
4,114,281	+		LU632_RS21505	0.43	-0.5
4,114,396	-		LU632_RS21505	0.58	-3.2
4,114,525	+		LU632_RS21505	0.76	-0.7
4,114,525	+		LU632_RS21505	0.76	-1.1
4,114,526	-		LU632_RS21505	0.76	-1.1
4,114,750	-				+5.4
4,114,759	-				+0.9
4,114,799	-				-2.1
4,114,814	-				-0.6
4,114,815	+				-0.8