Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21120

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
4,036,803	-	rlmE	LU632_RS21110	0.40	-2.2
4,036,803	-	rlmE	LU632_RS21110	0.40	+0.7
4,036,803	-	rlmE	LU632_RS21110	0.40	-0.5
4,036,803	-	rlmE	LU632_RS21110	0.40	+0.9
4,036,822	-	rlmE	LU632_RS21110	0.43	+0.9
4,036,822	-	rlmE	LU632_RS21110	0.43	-1.3
4,036,822	-	rlmE	LU632_RS21110	0.43	-0.0
4,036,831	-	rlmE	LU632_RS21110	0.44	+1.1
4,036,853	-	rlmE	LU632_RS21110	0.47	-0.1
4,036,935	-	rlmE	LU632_RS21110	0.60	-0.1
4,036,961	+	rlmE	LU632_RS21110	0.65	+0.9
4,036,974	-	rlmE	LU632_RS21110	0.67	-2.6
4,036,978	-	rlmE	LU632_RS21110	0.67	+0.7
4,036,981	+	rlmE	LU632_RS21110	0.68	-0.1
4,036,981	+	rlmE	LU632_RS21110	0.68	-0.1
4,036,981	+	rlmE	LU632_RS21110	0.68	-1.4
4,036,982	-	rlmE	LU632_RS21110	0.68	-0.9
4,037,036	+	rlmE	LU632_RS21110	0.77	+0.9
4,037,119	+	rlmE	LU632_RS21110	0.90	-2.6
4,037,119	+	rlmE	LU632_RS21110	0.90	+1.3
4,037,119	+	rlmE	LU632_RS21110	0.90	-1.9
4,037,120	-	rlmE	LU632_RS21110	0.90	-1.0
4,037,183	+				-1.6
4,037,196	+				-0.7
4,037,196	+				-0.7
4,037,197	-				-0.3
4,037,208	+				+2.4
4,037,208	-				-0.5
4,037,296	+				-0.2
4,037,296	+				-1.3
4,037,451	-	yhbY	LU632_RS21115	0.48	-0.3
4,037,457	-	yhbY	LU632_RS21115	0.50	+0.6
4,037,528	+	yhbY	LU632_RS21115	0.74	+0.3
4,037,528	+	yhbY	LU632_RS21115	0.74	+0.4
4,037,529	-	yhbY	LU632_RS21115	0.74	-0.1
4,037,560	+	yhbY	LU632_RS21115	0.85	+3.9
4,037,560	+	yhbY	LU632_RS21115	0.85	-0.5
4,037,561	-	yhbY	LU632_RS21115	0.85	+0.3
4,037,562	+	yhbY	LU632_RS21115	0.86	+1.8
4,037,562	+	yhbY	LU632_RS21115	0.86	-1.2
4,037,615	+				-0.5
4,037,649	-				+0.4
4,037,649	-				-0.8
4,037,686	-				-0.8
4,037,686	-				-0.4
4,038,548	+		LU632_RS21120	0.77	+0.9
4,038,633	-		LU632_RS21120	0.85	+1.5
4,038,636	-		LU632_RS21120	0.86	+1.5
4,038,735	+				-3.3
4,038,735	+				-0.6
4,038,778	-				+1.0
4,038,839	-				-0.9
4,038,910	+		LU632_RS21125	0.23	-0.4
4,038,910	+		LU632_RS21125	0.23	-0.0
4,038,977	-		LU632_RS21125	0.45	+0.2
4,039,004	-		LU632_RS21125	0.54	-0.7
4,039,102	-		LU632_RS21125	0.87	+0.5
4,039,102	-		LU632_RS21125	0.87	+0.9
4,039,102	-		LU632_RS21125	0.87	-0.3
4,039,102	-		LU632_RS21125	0.87	-2.1
4,039,102	-		LU632_RS21125	0.87	+0.4
4,039,105	+		LU632_RS21125	0.88	-1.2
4,039,106	-		LU632_RS21125	0.88	+0.4
4,039,106	-		LU632_RS21125	0.88	-0.4
4,039,106	-		LU632_RS21125	0.88	-0.5
4,039,106	-		LU632_RS21125	0.88	+0.4
4,039,195	+				+0.9
4,039,196	-				+1.0
4,039,197	+				-1.5
4,039,197	+				-0.1
4,039,197	+				-1.3
4,039,208	-				+0.2
4,039,242	+				-2.7
4,039,263	-				-1.4
4,039,263	-				-0.8
4,039,263	-				-1.0
4,039,274	+				+0.5
4,039,275	-				-0.7
4,039,275	-				-1.9
4,039,275	-				-1.8
4,039,278	+				-0.5
4,039,316	+				+0.9
4,039,316	+				-2.1
4,039,316	+				-0.1
4,039,317	-				-0.2
4,039,317	-				+0.5
4,039,317	-				-0.3
4,039,317	-				-0.7
4,039,425	-				+0.4
4,039,439	+				+1.4
4,039,439	+				+0.7
4,039,520	+				-0.5
4,039,520	+				-0.6
4,039,520	+				+0.9
4,039,521	-				-0.4
4,039,521	-				+0.5
4,039,521	-				-0.4
4,039,521	-				+0.7
4,039,595	+		LU632_RS21130	0.34	+1.9