Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21025

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS21020 and tnpA are separated by 97 nucleotidestnpA and LU632_RS21030 are separated by 252 nucleotides LU632_RS21020: LU632_RS21020 - IS110 family transposase, at 4,015,964 to 4,017,026 _RS21020 LU632_RS21025: tnpA - IS200/IS605 family transposase, at 4,017,124 to 4,017,561 tnpA LU632_RS21030: LU632_RS21030 - DEAD/DEAH family ATP-dependent RNA helicase, at 4,017,814 to 4,019,673 _RS21030 Position (kb) 4017 4018Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4017.061 kb on - strandat 4017.744 kb on + strandat 4017.767 kb on + strandat 4017.790 kb on - strandat 4017.793 kb on - strandat 4017.793 kb on - strandat 4017.795 kb on + strandat 4017.795 kb on + strandat 4017.795 kb on + strandat 4017.815 kb on + strandat 4017.815 kb on + strandat 4017.816 kb on - strandat 4017.816 kb on - strandat 4017.816 kb on - strandat 4017.816 kb on - strandat 4017.816 kb on - strandat 4017.816 kb on - strandat 4017.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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4,017,061 - +3.4
4,017,744 + -0.9
4,017,767 + +0.7
4,017,790 - +0.6
4,017,793 - -0.2
4,017,793 - -0.4
4,017,795 + +0.3
4,017,795 + +1.5
4,017,795 + -0.2
4,017,815 + +1.3
4,017,815 + +0.4
4,017,816 - -0.9
4,017,816 - -0.5
4,017,816 - +0.9
4,017,816 - -2.3
4,017,816 - -0.7
4,017,816 - +1.9
4,017,816 - +0.9

Or see this region's nucleotide sequence