Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20315

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20305 and LU632_RS20310 are separated by 197 nucleotidesLU632_RS20310 and LU632_RS20315 overlap by 27 nucleotidesLU632_RS20315 and LU632_RS20320 are separated by 70 nucleotidesLU632_RS20320 and LU632_RS20325 overlap by 8 nucleotidesLU632_RS20325 and LU632_RS20330 are separated by 119 nucleotides LU632_RS20305: LU632_RS20305 - type 1 fimbrial protein, at 3,864,219 to 3,865,331 _RS20305 LU632_RS20310: LU632_RS20310 - helix-turn-helix transcriptional regulator, at 3,865,529 to 3,866,032 _RS20310 LU632_RS20315: LU632_RS20315 - hypothetical protein, at 3,866,006 to 3,866,338 _RS20315 LU632_RS20320: LU632_RS20320 - hypothetical protein, at 3,866,409 to 3,866,753 _RS20320 LU632_RS20325: LU632_RS20325 - hypothetical protein, at 3,866,746 to 3,866,940 _RS20325 LU632_RS20330: LU632_RS20330 - IS6 family transposase, at 3,867,060 to 3,867,768 _RS20330 Position (kb) 3866 3867Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3865.028 kb on + strand, within LU632_RS20305at 3865.073 kb on + strand, within LU632_RS20305at 3865.129 kb on + strand, within LU632_RS20305at 3865.203 kb on + strand, within LU632_RS20305at 3865.204 kb on - strand, within LU632_RS20305at 3865.204 kb on - strand, within LU632_RS20305at 3865.260 kb on - strandat 3865.260 kb on - strandat 3865.321 kb on - strandat 3865.850 kb on - strand, within LU632_RS20310at 3865.904 kb on - strand, within LU632_RS20310at 3865.912 kb on + strand, within LU632_RS20310at 3865.940 kb on + strand, within LU632_RS20310at 3865.940 kb on + strand, within LU632_RS20310at 3865.965 kb on + strand, within LU632_RS20310at 3866.012 kb on + strandat 3866.127 kb on - strand, within LU632_RS20315at 3866.136 kb on + strand, within LU632_RS20315at 3866.136 kb on + strand, within LU632_RS20315at 3866.137 kb on - strand, within LU632_RS20315at 3866.184 kb on + strand, within LU632_RS20315at 3866.184 kb on + strand, within LU632_RS20315at 3866.185 kb on - strand, within LU632_RS20315at 3866.185 kb on - strand, within LU632_RS20315at 3866.313 kb on - strandat 3866.553 kb on + strand, within LU632_RS20320at 3866.754 kb on - strandat 3866.754 kb on - strandat 3866.768 kb on + strand, within LU632_RS20325at 3866.768 kb on + strand, within LU632_RS20325at 3866.768 kb on + strand, within LU632_RS20325at 3866.780 kb on + strand, within LU632_RS20325at 3866.781 kb on - strand, within LU632_RS20325at 3866.826 kb on + strand, within LU632_RS20325at 3866.829 kb on - strand, within LU632_RS20325at 3866.835 kb on + strand, within LU632_RS20325at 3866.861 kb on + strand, within LU632_RS20325at 3867.063 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.090 kb on + strandat 3867.202 kb on + strand, within LU632_RS20330at 3867.262 kb on + strand, within LU632_RS20330

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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3,865,028 + LU632_RS20305 0.73 +0.6
3,865,073 + LU632_RS20305 0.77 +2.1
3,865,129 + LU632_RS20305 0.82 +1.1
3,865,203 + LU632_RS20305 0.88 -2.2
3,865,204 - LU632_RS20305 0.88 +2.3
3,865,204 - LU632_RS20305 0.88 +0.1
3,865,260 - -0.8
3,865,260 - -1.8
3,865,321 - +1.6
3,865,850 - LU632_RS20310 0.64 -0.1
3,865,904 - LU632_RS20310 0.74 +1.3
3,865,912 + LU632_RS20310 0.76 +0.1
3,865,940 + LU632_RS20310 0.82 +1.2
3,865,940 + LU632_RS20310 0.82 -2.1
3,865,965 + LU632_RS20310 0.87 +0.0
3,866,012 + -1.1
3,866,127 - LU632_RS20315 0.36 +1.9
3,866,136 + LU632_RS20315 0.39 +0.2
3,866,136 + LU632_RS20315 0.39 +1.4
3,866,137 - LU632_RS20315 0.39 +0.9
3,866,184 + LU632_RS20315 0.53 +0.3
3,866,184 + LU632_RS20315 0.53 +4.4
3,866,185 - LU632_RS20315 0.54 +0.1
3,866,185 - LU632_RS20315 0.54 +2.3
3,866,313 - -1.1
3,866,553 + LU632_RS20320 0.42 -1.5
3,866,754 - +0.2
3,866,754 - +0.7
3,866,768 + LU632_RS20325 0.11 -2.3
3,866,768 + LU632_RS20325 0.11 -2.3
3,866,768 + LU632_RS20325 0.11 -0.3
3,866,780 + LU632_RS20325 0.17 -0.6
3,866,781 - LU632_RS20325 0.18 +1.3
3,866,826 + LU632_RS20325 0.41 -1.8
3,866,829 - LU632_RS20325 0.43 -1.6
3,866,835 + LU632_RS20325 0.46 +2.8
3,866,861 + LU632_RS20325 0.59 -1.3
3,867,063 + +0.6
3,867,090 + +0.6
3,867,090 + -0.7
3,867,090 + +2.9
3,867,090 + -0.4
3,867,090 + -0.4
3,867,202 + LU632_RS20330 0.20 +1.5
3,867,262 + LU632_RS20330 0.28 +0.7

Or see this region's nucleotide sequence