Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20135

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
3,833,543	-				+1.1
3,833,555	+				+1.9
3,833,597	-				+3.1
3,833,616	+				-1.8
3,833,617	-				-0.3
3,833,633	+				-2.5
3,833,633	+				+0.5
3,833,635	-				-1.5
3,833,683	-				-0.9
3,833,938	-	can	LU632_RS20130	0.42	-1.5
3,834,033	-	can	LU632_RS20130	0.57	-1.5
3,834,336	-				+2.1
3,834,482	-	hpt	LU632_RS20135	0.18	-0.2
3,834,492	+	hpt	LU632_RS20135	0.20	+1.2
3,834,493	-	hpt	LU632_RS20135	0.20	+0.8
3,834,493	-	hpt	LU632_RS20135	0.20	+1.6
3,834,493	-	hpt	LU632_RS20135	0.20	+3.3
3,834,541	+	hpt	LU632_RS20135	0.29	-0.8
3,834,541	+	hpt	LU632_RS20135	0.29	+0.5
3,834,542	-	hpt	LU632_RS20135	0.30	-1.2
3,834,542	-	hpt	LU632_RS20135	0.30	-0.3
3,834,542	-	hpt	LU632_RS20135	0.30	+0.4
3,834,545	+	hpt	LU632_RS20135	0.30	+0.8
3,834,578	+	hpt	LU632_RS20135	0.36	+0.5
3,834,601	+	hpt	LU632_RS20135	0.41	-1.1
3,834,602	-	hpt	LU632_RS20135	0.41	+1.2
3,834,700	+	hpt	LU632_RS20135	0.59	-0.2
3,834,701	-	hpt	LU632_RS20135	0.59	+0.5
3,834,701	-	hpt	LU632_RS20135	0.59	+4.0
3,834,727	+	hpt	LU632_RS20135	0.64	-0.1
3,834,776	-	hpt	LU632_RS20135	0.73	+4.0
3,834,782	-	hpt	LU632_RS20135	0.74	+0.4
3,834,812	+	hpt	LU632_RS20135	0.80	+0.2
3,834,834	+	hpt	LU632_RS20135	0.84	+0.2
3,834,919	+				+0.8
3,834,924	+				+0.4
3,834,925	-				-0.2
3,834,966	-				+0.2
3,835,013	-				+0.2
3,835,247	-				-1.3
3,835,247	-				+1.8
3,835,322	+				-0.5
3,835,332	-				-1.5
3,835,395	-				-2.4
3,835,509	+				+0.4
3,835,524	+				-1.2
3,835,549	-				-0.0
3,835,602	+				-2.3
3,835,602	+				+0.5
3,835,603	-				+0.8
3,835,604	+				-1.5
3,835,604	+				-0.7
3,835,604	+				+2.2
3,835,604	+				+0.5
3,835,605	-				+1.4
3,835,605	-				-0.4
3,835,605	-				-1.3
3,835,842	+	cueO	LU632_RS20140	0.21	+2.4
3,835,861	-	cueO	LU632_RS20140	0.22	+0.4