Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ispC and frr are separated by 131 nucleotides frr and pyrH are separated by 134 nucleotides pyrH and LU632_RS19960 overlap by 2 nucleotides LU632_RS19960 and tsf overlap by 4 nucleotides
LU632_RS19945: ispC - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,793,082 to 3,794,278
ispC
LU632_RS19950: frr - ribosome recycling factor, at 3,794,410 to 3,794,967
frr
LU632_RS19955: pyrH - UMP kinase, at 3,795,102 to 3,795,827
pyrH
LU632_RS19960: LU632_RS19960 - hypothetical protein, at 3,795,826 to 3,795,984
_RS19960
LU632_RS19965: tsf - translation elongation factor Ts, at 3,795,981 to 3,796,832
tsf
Position (kb) 3795
3796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3794.383 kb on - strand at 3795.011 kb on - strand at 3795.027 kb on - strand at 3795.027 kb on - strand at 3795.027 kb on - strand at 3795.055 kb on - strand at 3795.077 kb on - strand at 3795.101 kb on - strand at 3795.103 kb on + strand at 3795.866 kb on - strand, within LU632_RS19960 at 3795.866 kb on - strand, within LU632_RS19960 at 3795.885 kb on - strand, within LU632_RS19960
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 3,794,383 - -0.1 3,795,011 - +1.0 3,795,027 - -0.8 3,795,027 - +2.8 3,795,027 - -0.2 3,795,055 - -1.6 3,795,077 - -0.1 3,795,101 - +0.1 3,795,103 + -3.0 3,795,866 - LU632_RS19960 0.25 +1.2 3,795,866 - LU632_RS19960 0.25 +0.5 3,795,885 - LU632_RS19960 0.37 +0.7
Or see this region's nucleotide sequence