Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18580

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS18575 and tnpA are separated by 256 nucleotidestnpA and LU632_RS18585 are separated by 529 nucleotides LU632_RS18575: LU632_RS18575 - tyrosine-type recombinase/integrase, at 3,513,287 to 3,514,224 _RS18575 LU632_RS18580: tnpA - IS200/IS605 family transposase, at 3,514,481 to 3,514,918 tnpA LU632_RS18585: LU632_RS18585 - DUF3251 domain-containing protein, at 3,515,448 to 3,516,002 _RS18585 Position (kb) 3514 3515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3515.006 kb on + strandat 3515.053 kb on + strandat 3515.202 kb on + strandat 3515.231 kb on + strandat 3515.425 kb on + strandat 3515.597 kb on + strand, within LU632_RS18585at 3515.652 kb on - strand, within LU632_RS18585at 3515.904 kb on - strand, within LU632_RS18585

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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3,515,006 + +0.4
3,515,053 + +0.1
3,515,202 + -0.7
3,515,231 + +0.2
3,515,425 + +0.7
3,515,597 + LU632_RS18585 0.27 +0.4
3,515,652 - LU632_RS18585 0.37 -2.1
3,515,904 - LU632_RS18585 0.82 +3.3

Or see this region's nucleotide sequence