Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS18555 and LU632_RS18560 are separated by 2 nucleotides LU632_RS18560 and LU632_RS18565 are separated by 187 nucleotides LU632_RS18565 and LU632_RS18570 overlap by 4 nucleotides LU632_RS18570 and LU632_RS18575 are separated by 250 nucleotides
LU632_RS18555: LU632_RS18555 - hypothetical protein, at 3,511,763 to 3,512,050
_RS18555
LU632_RS18560: LU632_RS18560 - hypothetical protein, at 3,512,053 to 3,512,331
_RS18560
LU632_RS18565: LU632_RS18565 - IS1 family transposase, at 3,512,519 to 3,513,022
_RS18565
LU632_RS18570: LU632_RS18570 - hypothetical protein, at 3,513,019 to 3,513,036
_RS18570
LU632_RS18575: LU632_RS18575 - tyrosine-type recombinase/integrase, at 3,513,287 to 3,514,224
_RS18575
Position (kb) 3513
3514 Strain fitness (log2 ratio) -1
0
1 at 3512.172 kb on + strand, within LU632_RS18560 at 3512.385 kb on + strand at 3512.386 kb on - strand at 3512.396 kb on + strand at 3512.484 kb on + strand at 3512.835 kb on + strand, within LU632_RS18565 at 3512.835 kb on + strand, within LU632_RS18565 at 3512.835 kb on + strand, within LU632_RS18565 at 3513.276 kb on - strand at 3513.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 3,512,172 + LU632_RS18560 0.43 -0.1 3,512,385 + +0.6 3,512,386 - +0.1 3,512,396 + +0.2 3,512,484 + -0.3 3,512,835 + LU632_RS18565 0.63 -0.5 3,512,835 + LU632_RS18565 0.63 -0.4 3,512,835 + LU632_RS18565 0.63 -0.8 3,513,276 - -1.3 3,513,365 + +0.8
Or see this region's nucleotide sequence