Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18540

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
3,504,618	+		LU632_RS18535	0.53	+2.4
3,504,710	-		LU632_RS18535	0.57	-1.9
3,504,783	+		LU632_RS18535	0.61	+1.0
3,505,001	-		LU632_RS18535	0.72	-0.8
3,505,016	+		LU632_RS18535	0.72	-1.6
3,505,016	+		LU632_RS18535	0.72	-0.0
3,505,016	+		LU632_RS18535	0.72	-0.9
3,505,017	-		LU632_RS18535	0.73	+0.2
3,505,028	-		LU632_RS18535	0.73	+0.9
3,505,103	+		LU632_RS18535	0.77	+0.2
3,505,103	+		LU632_RS18535	0.77	-0.6
3,505,174	+		LU632_RS18535	0.80	-0.4
3,505,181	-		LU632_RS18535	0.81	-1.0
3,505,186	+		LU632_RS18535	0.81	+0.1
3,505,366	+		LU632_RS18535	0.90	+2.3
3,505,366	-		LU632_RS18535	0.90	+0.5
3,505,568	+				+1.1
3,505,568	+				+0.9
3,505,569	-				+0.3
3,505,596	-				+0.1
3,505,596	-				-3.0
3,505,607	+				+0.9
3,505,607	+				-0.8
3,505,665	-		LU632_RS18540	0.20	+1.7
3,505,775	+		LU632_RS18540	0.46	+4.6
3,505,790	+		LU632_RS18540	0.50	-1.1
3,505,791	-		LU632_RS18540	0.50	+4.4
3,505,791	-		LU632_RS18540	0.50	+1.0
3,505,796	+		LU632_RS18540	0.51	+0.8
3,505,834	-		LU632_RS18540	0.60	-0.3
3,505,958	-		LU632_RS18540	0.90	+0.4
3,505,980	-				+0.7
3,506,011	+				+0.7
3,506,012	-				-0.4
3,506,012	-				-1.6
3,506,013	+				+0.4
3,506,016	+				-0.4
3,506,045	+				-1.6
3,506,045	+				+0.7
3,506,109	+				-1.1
3,506,158	-				-1.3
3,506,158	-				+1.2
3,506,296	-				-1.6
3,506,346	-				+1.4
3,506,458	-				+0.2
3,506,599	+		LU632_RS18545	0.12	-1.5
3,506,600	-		LU632_RS18545	0.12	-1.3
3,506,805	+		LU632_RS18545	0.17	-2.3
3,506,808	+		LU632_RS18545	0.17	-0.1
3,506,809	-		LU632_RS18545	0.17	-0.0
3,506,871	+		LU632_RS18545	0.19	-0.3
3,506,872	-		LU632_RS18545	0.19	+0.3
3,506,872	-		LU632_RS18545	0.19	+1.2
3,506,872	-		LU632_RS18545	0.19	-0.6
3,506,934	+		LU632_RS18545	0.20	-1.3
3,506,935	-		LU632_RS18545	0.20	-0.8
3,506,935	-		LU632_RS18545	0.20	-0.7