Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15915

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
3,007,541	+	galK	LU632_RS15910	0.25	-1.0
3,007,542	-	galK	LU632_RS15910	0.25	-0.2
3,007,542	-	galK	LU632_RS15910	0.25	+0.1
3,007,542	-	galK	LU632_RS15910	0.25	+1.2
3,007,600	+	galK	LU632_RS15910	0.30	-2.2
3,007,786	-	galK	LU632_RS15910	0.46	-0.4
3,007,925	+	galK	LU632_RS15910	0.58	+0.6
3,007,926	-	galK	LU632_RS15910	0.58	-2.2
3,007,926	-	galK	LU632_RS15910	0.58	-2.2
3,008,197	+	galK	LU632_RS15910	0.82	-2.7
3,008,336	+				-0.5
3,008,337	-				-1.8
3,008,337	-				-1.4
3,008,357	-				-2.0
3,008,369	+				+1.7
3,008,369	+				-2.0
3,008,454	+				-2.2
3,008,455	-				+0.3
3,008,584	+	galM	LU632_RS15915	0.18	+0.4
3,008,584	+	galM	LU632_RS15915	0.18	+1.1
3,008,584	+	galM	LU632_RS15915	0.18	+0.7
3,008,637	+	galM	LU632_RS15915	0.23	+0.2
3,008,699	+	galM	LU632_RS15915	0.29	+1.0
3,008,700	-	galM	LU632_RS15915	0.29	+0.2
3,008,700	-	galM	LU632_RS15915	0.29	-1.2
3,008,831	+	galM	LU632_RS15915	0.41	+2.7
3,008,831	+	galM	LU632_RS15915	0.41	+2.8
3,008,862	+	galM	LU632_RS15915	0.44	-1.4
3,008,930	-	galM	LU632_RS15915	0.51	-0.4
3,008,982	-	galM	LU632_RS15915	0.56	-2.1
3,008,982	-	galM	LU632_RS15915	0.56	-0.1
3,009,222	+	galM	LU632_RS15915	0.79	-1.6
3,009,293	+	galM	LU632_RS15915	0.86	+1.4
3,009,293	+	galM	LU632_RS15915	0.86	+0.6
3,009,294	-	galM	LU632_RS15915	0.86	+0.4
3,009,294	-	galM	LU632_RS15915	0.86	-0.3
3,009,294	-	galM	LU632_RS15915	0.86	-1.7
3,009,418	+				+0.1
3,009,478	+				-1.0
3,009,505	+				-0.4
3,010,346	-				-0.4
3,010,404	-				+1.4