Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12190

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
2,310,589	+		LU632_RS12185	0.15	-1.9
2,310,589	+		LU632_RS12185	0.15	-0.5
2,310,590	-		LU632_RS12185	0.15	-0.0
2,310,590	-		LU632_RS12185	0.15	+0.1
2,310,590	-		LU632_RS12185	0.15	+0.4
2,310,590	-		LU632_RS12185	0.15	+1.9
2,310,659	+		LU632_RS12185	0.22	-0.7
2,310,660	-		LU632_RS12185	0.22	+0.7
2,310,666	-		LU632_RS12185	0.23	-3.6
2,310,677	+		LU632_RS12185	0.24	+0.0
2,310,838	-		LU632_RS12185	0.40	+0.9
2,310,861	+		LU632_RS12185	0.42	+0.2
2,310,861	+		LU632_RS12185	0.42	+0.1
2,310,861	+		LU632_RS12185	0.42	-1.1
2,310,862	-		LU632_RS12185	0.42	-0.4
2,310,862	-		LU632_RS12185	0.42	+0.9
2,310,862	-		LU632_RS12185	0.42	-0.1
2,310,951	-		LU632_RS12185	0.51	+0.4
2,311,031	+		LU632_RS12185	0.59	+2.5
2,311,032	-		LU632_RS12185	0.59	-0.1
2,311,219	+		LU632_RS12185	0.78	-1.3
2,311,268	+		LU632_RS12185	0.83	+1.5
2,311,268	+		LU632_RS12185	0.83	+0.3
2,311,268	+		LU632_RS12185	0.83	+0.4
2,311,269	-		LU632_RS12185	0.83	+0.4
2,311,269	-		LU632_RS12185	0.83	+1.1
2,311,269	-		LU632_RS12185	0.83	+1.0
2,311,269	-		LU632_RS12185	0.83	-2.9
2,311,269	-		LU632_RS12185	0.83	-0.3
2,311,269	-		LU632_RS12185	0.83	-1.8
2,311,269	-		LU632_RS12185	0.83	+1.2
2,311,291	-		LU632_RS12185	0.85	+1.5
2,311,354	-				+1.4
2,311,395	-				-0.5
2,311,460	+				+1.0
2,311,464	+				+0.6
2,311,465	-				+1.1
2,311,465	-				+0.4
2,311,469	-				-1.6
2,311,504	+				-1.4
2,311,504	+				+1.5
2,311,504	+				-0.2
2,311,505	-				-0.6
2,311,507	+				-1.5
2,311,510	-				+0.7
2,311,600	+				+0.3
2,311,600	+				-0.3
2,311,601	-				-0.5
2,311,620	+				+0.1
2,311,620	+				-0.9
2,311,687	+		LU632_RS12190	0.16	-0.7
2,311,691	-		LU632_RS12190	0.16	+2.3
2,311,740	-		LU632_RS12190	0.24	+0.9
2,311,835	+		LU632_RS12190	0.39	-2.4
2,311,835	+		LU632_RS12190	0.39	-3.1
2,311,836	-		LU632_RS12190	0.39	-1.5
2,311,916	+		LU632_RS12190	0.52	-0.3
2,311,916	+		LU632_RS12190	0.52	-0.8
2,311,916	+		LU632_RS12190	0.52	+0.0
2,311,916	+		LU632_RS12190	0.52	-1.9
2,311,916	+		LU632_RS12190	0.52	+3.0
2,311,917	-		LU632_RS12190	0.52	+1.0
2,311,917	-		LU632_RS12190	0.52	+0.6
2,311,917	-		LU632_RS12190	0.52	+0.8
2,311,917	-		LU632_RS12190	0.52	-1.7
2,311,917	-		LU632_RS12190	0.52	+0.7
2,312,030	+		LU632_RS12190	0.70	+0.4
2,312,031	-		LU632_RS12190	0.70	+1.7
2,312,056	-		LU632_RS12190	0.74	-0.2
2,312,056	-		LU632_RS12190	0.74	+0.7
2,312,123	+		LU632_RS12190	0.85	-1.4
2,312,123	+		LU632_RS12190	0.85	+0.8
2,312,203	+				+2.0
2,312,270	+				+0.5
2,312,323	+				+1.5
2,312,454	+				-1.4
2,312,455	-				-0.1
2,312,455	-				-0.2
2,312,460	-				+0.7
2,312,460	-				+0.5
2,312,475	-				-0.9
2,312,500	+				-0.0
2,312,500	+				-1.6
2,312,501	-				-1.7
2,312,501	-				+1.7
2,312,634	+				+0.4
2,312,712	-		LU632_RS12195	0.11	+1.1
2,312,748	+		LU632_RS12195	0.12	-2.4
2,312,749	-		LU632_RS12195	0.12	-0.5
2,312,762	-		LU632_RS12195	0.13	-0.4
2,312,764	+		LU632_RS12195	0.13	+1.1
2,312,765	-		LU632_RS12195	0.13	+1.0
2,312,823	+		LU632_RS12195	0.15	-1.6
2,312,882	-		LU632_RS12195	0.17	-0.4
2,312,976	+		LU632_RS12195	0.20	-1.1
2,313,046	+		LU632_RS12195	0.22	-0.9
2,313,079	+		LU632_RS12195	0.23	+0.6
2,313,079	+		LU632_RS12195	0.23	+3.0
2,313,099	+		LU632_RS12195	0.24	-1.2
2,313,099	+		LU632_RS12195	0.24	+1.8
2,313,109	+		LU632_RS12195	0.24	+1.3
2,313,119	-		LU632_RS12195	0.25	+0.5
2,313,143	-		LU632_RS12195	0.25	+0.1
2,313,143	-		LU632_RS12195	0.25	-0.1