Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08765

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
1,646,128	-				-0.5
1,646,402	+				+2.6
1,646,406	+				+3.6
1,646,406	+				+3.1
1,646,411	+				+1.6
1,646,427	-				+4.8
1,646,465	-				+2.4
1,646,472	+				-0.2
1,646,472	+				+2.0
1,646,536	+				+2.4
1,646,613	-				+3.3
1,646,646	-				+2.6
1,646,751	-				+2.3
1,646,751	-				+3.2
1,646,773	+				+1.4
1,646,978	-	wbaP	LU632_RS08765	0.12	+2.3
1,646,987	-	wbaP	LU632_RS08765	0.12	+3.8
1,646,990	-	wbaP	LU632_RS08765	0.13	+4.9
1,647,039	-	wbaP	LU632_RS08765	0.16	+4.2
1,647,040	+	wbaP	LU632_RS08765	0.16	+2.4
1,647,227	-	wbaP	LU632_RS08765	0.29	+1.3
1,647,379	-	wbaP	LU632_RS08765	0.40	+2.6
1,647,414	+	wbaP	LU632_RS08765	0.42	+4.8
1,647,436	+	wbaP	LU632_RS08765	0.44	-0.8
1,647,444	+	wbaP	LU632_RS08765	0.44	+1.2
1,647,445	-	wbaP	LU632_RS08765	0.44	+0.8
1,647,535	-	wbaP	LU632_RS08765	0.51	+2.5
1,647,559	-	wbaP	LU632_RS08765	0.52	+2.3
1,647,559	-	wbaP	LU632_RS08765	0.52	-2.2
1,647,579	-	wbaP	LU632_RS08765	0.54	+4.6
1,647,697	+	wbaP	LU632_RS08765	0.62	-0.4
1,647,698	-	wbaP	LU632_RS08765	0.62	+1.6
1,647,718	+	wbaP	LU632_RS08765	0.63	+2.9
1,647,718	+	wbaP	LU632_RS08765	0.63	+2.8
1,647,788	-	wbaP	LU632_RS08765	0.68	-1.4
1,648,022	-	wbaP	LU632_RS08765	0.85	+2.9
1,648,022	-	wbaP	LU632_RS08765	0.85	+3.6
1,648,062	-	wbaP	LU632_RS08765	0.87	+2.1
1,648,064	+	wbaP	LU632_RS08765	0.87	+1.6
1,648,065	-	wbaP	LU632_RS08765	0.88	+6.4
1,648,067	+	wbaP	LU632_RS08765	0.88	+2.2
1,648,067	+	wbaP	LU632_RS08765	0.88	-0.6
1,648,067	+	wbaP	LU632_RS08765	0.88	+4.1
1,648,067	+	wbaP	LU632_RS08765	0.88	+0.9
1,648,067	+	wbaP	LU632_RS08765	0.88	+0.9
1,648,067	+	wbaP	LU632_RS08765	0.88	+1.0
1,648,067	+	wbaP	LU632_RS08765	0.88	+2.0
1,648,067	+	wbaP	LU632_RS08765	0.88	+3.8
1,648,068	-	wbaP	LU632_RS08765	0.88	+1.4
1,648,068	-	wbaP	LU632_RS08765	0.88	-0.1
1,648,068	-	wbaP	LU632_RS08765	0.88	+2.8
1,648,069	+	wbaP	LU632_RS08765	0.88	+7.5
1,648,069	+	wbaP	LU632_RS08765	0.88	+2.1
1,648,143	-				-0.7
1,648,162	-				+5.7
1,648,288	-				-2.2
1,648,303	+				+1.0
1,648,304	-				+0.0
1,648,308	+				-0.1
1,648,308	+				+0.0
1,648,340	+				+0.2
1,648,341	-				-2.7
1,648,395	-				+1.1
1,648,396	+				+2.1
1,648,396	+				+1.0
1,648,396	+				+1.7
1,648,396	+				-2.4
1,648,397	-				-2.5
1,648,407	+				+0.2
1,648,408	-				-3.0
1,648,411	+				+0.0
1,648,411	+				+0.3
1,648,414	+				-0.4
1,648,414	+				+2.3
1,648,414	+				+0.2
1,648,441	+				+0.3
1,648,458	-				-3.0
1,648,492	-				-3.1
1,648,517	-				-5.2
1,648,542	+				-1.9
1,648,549	+				-4.2
1,648,549	+				-2.7
1,648,556	-				-5.9
1,648,651	+		LU632_RS08770	0.12	-4.5
1,648,656	-		LU632_RS08770	0.13	-2.5
1,648,656	-		LU632_RS08770	0.13	+0.6
1,648,717	-		LU632_RS08770	0.18	-1.0
1,648,749	+		LU632_RS08770	0.21	-4.7
1,648,750	-		LU632_RS08770	0.21	-3.0
1,648,862	-		LU632_RS08770	0.31	-3.6
1,648,885	+		LU632_RS08770	0.33	-2.7
1,648,886	-		LU632_RS08770	0.33	-0.4
1,648,899	-		LU632_RS08770	0.34	-3.0
1,648,975	+		LU632_RS08770	0.41	-4.7
1,648,976	-		LU632_RS08770	0.41	-0.4
1,648,992	+		LU632_RS08770	0.42	-1.0
1,648,998	+		LU632_RS08770	0.43	-5.4
1,648,999	-		LU632_RS08770	0.43	-2.4
1,648,999	-		LU632_RS08770	0.43	-0.8
1,649,014	+		LU632_RS08770	0.44	-0.4
1,649,014	+		LU632_RS08770	0.44	+0.6
1,649,050	+		LU632_RS08770	0.48	-2.7
1,649,050	+		LU632_RS08770	0.48	-0.4
1,649,234	+		LU632_RS08770	0.64	-2.8