Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08560 and LU632_RS08565 overlap by 8 nucleotides LU632_RS08565 and metG are separated by 149 nucleotides metG and apbC are separated by 168 nucleotides
LU632_RS08560: LU632_RS08560 - CidB/LrgB family autolysis modulator, at 1,607,981 to 1,608,673
_RS08560
LU632_RS08565: LU632_RS08565 - CidA/LrgA family protein, at 1,608,666 to 1,609,061
_RS08565
LU632_RS08570: metG - methionine--tRNA ligase, at 1,609,211 to 1,611,244
metG
LU632_RS08575: apbC - iron-sulfur cluster carrier protein ApbC, at 1,611,413 to 1,612,522
apbC
Position (kb) 1609
1610
1611
1612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1608.221 kb on + strand, within LU632_RS08560 at 1608.222 kb on - strand, within LU632_RS08560 at 1608.222 kb on - strand, within LU632_RS08560 at 1608.483 kb on - strand, within LU632_RS08560 at 1608.523 kb on - strand, within LU632_RS08560 at 1608.529 kb on + strand, within LU632_RS08560 at 1608.529 kb on + strand, within LU632_RS08560 at 1608.529 kb on + strand, within LU632_RS08560 at 1608.530 kb on - strand, within LU632_RS08560 at 1608.554 kb on - strand, within LU632_RS08560 at 1608.616 kb on + strand at 1608.617 kb on - strand at 1608.617 kb on - strand at 1608.741 kb on + strand, within LU632_RS08565 at 1608.854 kb on - strand, within LU632_RS08565 at 1608.854 kb on - strand, within LU632_RS08565 at 1608.854 kb on - strand, within LU632_RS08565 at 1608.934 kb on - strand, within LU632_RS08565 at 1608.934 kb on - strand, within LU632_RS08565 at 1609.010 kb on + strand, within LU632_RS08565 at 1609.010 kb on + strand, within LU632_RS08565 at 1609.011 kb on - strand, within LU632_RS08565 at 1609.030 kb on + strand at 1609.094 kb on - strand at 1609.119 kb on + strand at 1609.125 kb on + strand at 1609.126 kb on - strand at 1609.212 kb on + strand at 1609.213 kb on - strand at 1609.505 kb on - strand, within metG at 1609.509 kb on - strand, within metG at 1611.452 kb on + strand at 1611.471 kb on + strand at 1611.474 kb on + strand at 1611.474 kb on + strand at 1611.682 kb on + strand, within apbC at 1611.682 kb on + strand, within apbC at 1611.685 kb on - strand, within apbC at 1611.685 kb on - strand, within apbC at 1611.871 kb on + strand, within apbC at 1611.871 kb on + strand, within apbC at 1611.965 kb on + strand, within apbC at 1611.989 kb on - strand, within apbC at 1611.989 kb on - strand, within apbC at 1611.989 kb on - strand, within apbC at 1612.109 kb on - strand, within apbC at 1612.124 kb on - strand, within apbC at 1612.124 kb on - strand, within apbC at 1612.219 kb on - strand, within apbC at 1612.224 kb on + strand, within apbC at 1612.243 kb on + strand, within apbC at 1612.244 kb on - strand, within apbC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 1,608,221 + LU632_RS08560 0.35 -0.9 1,608,222 - LU632_RS08560 0.35 -1.1 1,608,222 - LU632_RS08560 0.35 +0.6 1,608,483 - LU632_RS08560 0.72 +1.1 1,608,523 - LU632_RS08560 0.78 +0.4 1,608,529 + LU632_RS08560 0.79 -0.5 1,608,529 + LU632_RS08560 0.79 -0.3 1,608,529 + LU632_RS08560 0.79 -0.4 1,608,530 - LU632_RS08560 0.79 +0.6 1,608,554 - LU632_RS08560 0.83 +1.1 1,608,616 + +1.1 1,608,617 - +1.3 1,608,617 - +0.3 1,608,741 + LU632_RS08565 0.19 -1.2 1,608,854 - LU632_RS08565 0.47 +2.8 1,608,854 - LU632_RS08565 0.47 -0.5 1,608,854 - LU632_RS08565 0.47 +3.6 1,608,934 - LU632_RS08565 0.68 +1.2 1,608,934 - LU632_RS08565 0.68 +2.0 1,609,010 + LU632_RS08565 0.87 -2.9 1,609,010 + LU632_RS08565 0.87 -1.1 1,609,011 - LU632_RS08565 0.87 +1.1 1,609,030 + -0.0 1,609,094 - -2.1 1,609,119 + -1.0 1,609,125 + +0.3 1,609,126 - +3.1 1,609,212 + -1.5 1,609,213 - +1.2 1,609,505 - metG LU632_RS08570 0.14 +5.1 1,609,509 - metG LU632_RS08570 0.15 -0.3 1,611,452 + -1.7 1,611,471 + -1.7 1,611,474 + +0.2 1,611,474 + -1.9 1,611,682 + apbC LU632_RS08575 0.24 -0.7 1,611,682 + apbC LU632_RS08575 0.24 -0.6 1,611,685 - apbC LU632_RS08575 0.25 -0.1 1,611,685 - apbC LU632_RS08575 0.25 -1.0 1,611,871 + apbC LU632_RS08575 0.41 +0.6 1,611,871 + apbC LU632_RS08575 0.41 -0.1 1,611,965 + apbC LU632_RS08575 0.50 -1.5 1,611,989 - apbC LU632_RS08575 0.52 +5.2 1,611,989 - apbC LU632_RS08575 0.52 -0.2 1,611,989 - apbC LU632_RS08575 0.52 -1.2 1,612,109 - apbC LU632_RS08575 0.63 -1.0 1,612,124 - apbC LU632_RS08575 0.64 -0.8 1,612,124 - apbC LU632_RS08575 0.64 -0.2 1,612,219 - apbC LU632_RS08575 0.73 +0.7 1,612,224 + apbC LU632_RS08575 0.73 -0.2 1,612,243 + apbC LU632_RS08575 0.75 -0.4 1,612,244 - apbC LU632_RS08575 0.75 -2.7
Or see this region's nucleotide sequence