Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadL and LU632_RS07310 are separated by 375 nucleotides LU632_RS07310 and LU632_RS07315 are separated by 173 nucleotides LU632_RS07315 and LU632_RS07320 are separated by 84 nucleotides LU632_RS07320 and LU632_RS07325 are separated by 139 nucleotides
LU632_RS07305: fadL - long-chain fatty acid transporter FadL, at 1,379,543 to 1,380,826
fadL
LU632_RS07310: LU632_RS07310 - YfcZ/YiiS family protein, at 1,381,202 to 1,381,498
_RS07310
LU632_RS07315: LU632_RS07315 - 3-ketoacyl-CoA thiolase, at 1,381,672 to 1,381,848
_RS07315
LU632_RS07320: LU632_RS07320 - recombinase family protein, at 1,381,933 to 1,382,271
_RS07320
LU632_RS07325: LU632_RS07325 - IS91 family transposase, at 1,382,411 to 1,383,634
_RS07325
Position (kb) 1381
1382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1380.402 kb on + strand, within fadL at 1380.402 kb on + strand, within fadL at 1380.430 kb on - strand, within fadL at 1380.448 kb on - strand, within fadL at 1380.489 kb on - strand, within fadL at 1380.539 kb on - strand, within fadL at 1380.638 kb on + strand, within fadL at 1380.853 kb on - strand at 1380.857 kb on - strand at 1380.873 kb on + strand at 1380.903 kb on + strand at 1380.935 kb on + strand at 1380.938 kb on - strand at 1380.938 kb on - strand at 1380.938 kb on - strand at 1380.965 kb on - strand at 1380.979 kb on - strand at 1381.079 kb on + strand at 1381.199 kb on + strand at 1381.199 kb on + strand at 1381.199 kb on + strand at 1381.199 kb on + strand at 1381.199 kb on + strand at 1381.200 kb on - strand at 1381.200 kb on - strand at 1381.200 kb on - strand at 1381.200 kb on - strand at 1381.200 kb on - strand at 1381.200 kb on - strand at 1381.201 kb on + strand at 1381.201 kb on + strand at 1381.201 kb on + strand at 1381.202 kb on - strand at 1381.231 kb on + strand at 1381.292 kb on - strand, within LU632_RS07310 at 1381.292 kb on - strand, within LU632_RS07310 at 1381.292 kb on - strand, within LU632_RS07310 at 1381.292 kb on - strand, within LU632_RS07310 at 1381.390 kb on + strand, within LU632_RS07310 at 1381.391 kb on - strand, within LU632_RS07310 at 1381.391 kb on - strand, within LU632_RS07310 at 1381.597 kb on - strand at 1381.597 kb on - strand at 1381.659 kb on - strand at 1381.659 kb on - strand at 1381.714 kb on - strand, within LU632_RS07315 at 1381.714 kb on - strand, within LU632_RS07315 at 1381.814 kb on + strand, within LU632_RS07315 at 1382.010 kb on - strand, within LU632_RS07320 at 1382.043 kb on + strand, within LU632_RS07320 at 1382.083 kb on + strand, within LU632_RS07320 at 1382.104 kb on + strand, within LU632_RS07320 at 1382.105 kb on - strand, within LU632_RS07320 at 1382.159 kb on - strand, within LU632_RS07320 at 1382.232 kb on + strand, within LU632_RS07320 at 1382.233 kb on - strand, within LU632_RS07320 at 1382.233 kb on - strand, within LU632_RS07320
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 1,380,402 + fadL LU632_RS07305 0.67 +1.4 1,380,402 + fadL LU632_RS07305 0.67 -0.5 1,380,430 - fadL LU632_RS07305 0.69 +0.2 1,380,448 - fadL LU632_RS07305 0.70 +1.4 1,380,489 - fadL LU632_RS07305 0.74 +0.3 1,380,539 - fadL LU632_RS07305 0.78 -1.9 1,380,638 + fadL LU632_RS07305 0.85 -1.7 1,380,853 - -0.3 1,380,857 - +0.1 1,380,873 + +0.7 1,380,903 + -0.6 1,380,935 + -0.1 1,380,938 - -1.0 1,380,938 - +0.1 1,380,938 - +0.7 1,380,965 - -3.0 1,380,979 - +0.0 1,381,079 + +0.5 1,381,199 + +0.7 1,381,199 + +0.2 1,381,199 + -0.9 1,381,199 + -0.6 1,381,199 + -0.4 1,381,200 - +0.9 1,381,200 - -1.3 1,381,200 - +1.3 1,381,200 - -1.3 1,381,200 - +0.4 1,381,200 - +0.4 1,381,201 + +5.8 1,381,201 + +0.7 1,381,201 + -0.3 1,381,202 - -1.9 1,381,231 + +1.2 1,381,292 - LU632_RS07310 0.30 -1.5 1,381,292 - LU632_RS07310 0.30 +0.9 1,381,292 - LU632_RS07310 0.30 +6.7 1,381,292 - LU632_RS07310 0.30 +2.2 1,381,390 + LU632_RS07310 0.63 -0.3 1,381,391 - LU632_RS07310 0.64 +0.4 1,381,391 - LU632_RS07310 0.64 +0.6 1,381,597 - -2.8 1,381,597 - -0.3 1,381,659 - -0.2 1,381,659 - -1.3 1,381,714 - LU632_RS07315 0.24 +1.5 1,381,714 - LU632_RS07315 0.24 +1.7 1,381,814 + LU632_RS07315 0.80 +1.0 1,382,010 - LU632_RS07320 0.23 +0.9 1,382,043 + LU632_RS07320 0.32 +0.7 1,382,083 + LU632_RS07320 0.44 +0.3 1,382,104 + LU632_RS07320 0.50 -0.1 1,382,105 - LU632_RS07320 0.51 +0.0 1,382,159 - LU632_RS07320 0.67 +0.1 1,382,232 + LU632_RS07320 0.88 -1.8 1,382,233 - LU632_RS07320 0.88 -0.3 1,382,233 - LU632_RS07320 0.88 -1.3
Or see this region's nucleotide sequence