Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmD and relA are separated by 13 nucleotides relA and LU632_RS06355 overlap by 20 nucleotides LU632_RS06355 and mazG are separated by 2 nucleotides
LU632_RS06345: rlmD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,218,219 to 1,219,556
rlmD
LU632_RS06350: relA - GTP diphosphokinase, at 1,219,570 to 1,221,798
relA
LU632_RS06355: LU632_RS06355 - hypothetical protein, at 1,221,779 to 1,221,997
_RS06355
LU632_RS06360: mazG - nucleoside triphosphate pyrophosphohydrolase, at 1,222,000 to 1,222,782
mazG
Position (kb) 1219
1220
1221
1222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1218.584 kb on - strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.717 kb on - strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.754 kb on + strand, within rlmD at 1218.834 kb on - strand, within rlmD at 1218.914 kb on + strand, within rlmD at 1218.955 kb on + strand, within rlmD at 1219.029 kb on - strand, within rlmD at 1219.079 kb on - strand, within rlmD at 1219.089 kb on - strand, within rlmD at 1219.111 kb on + strand, within rlmD at 1219.140 kb on - strand, within rlmD at 1219.194 kb on - strand, within rlmD at 1219.198 kb on + strand, within rlmD at 1219.233 kb on - strand, within rlmD at 1219.242 kb on - strand, within rlmD at 1219.263 kb on - strand, within rlmD at 1219.280 kb on - strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.364 kb on + strand, within rlmD at 1219.365 kb on - strand, within rlmD at 1219.365 kb on - strand, within rlmD at 1219.396 kb on - strand, within rlmD at 1219.407 kb on - strand, within rlmD at 1219.416 kb on - strand, within rlmD at 1219.484 kb on + strand at 1219.485 kb on - strand at 1219.485 kb on - strand at 1219.485 kb on - strand at 1219.523 kb on - strand at 1219.526 kb on + strand at 1219.925 kb on + strand, within relA at 1219.981 kb on - strand, within relA at 1219.981 kb on - strand, within relA at 1220.037 kb on + strand, within relA at 1220.037 kb on + strand, within relA at 1220.038 kb on - strand, within relA at 1220.038 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.110 kb on - strand, within relA at 1220.114 kb on - strand, within relA at 1220.114 kb on - strand, within relA at 1220.182 kb on + strand, within relA at 1220.200 kb on + strand, within relA at 1220.201 kb on - strand, within relA at 1220.201 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.203 kb on - strand, within relA at 1220.251 kb on + strand, within relA at 1220.251 kb on + strand, within relA at 1220.252 kb on - strand, within relA at 1220.252 kb on - strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.334 kb on + strand, within relA at 1220.335 kb on - strand, within relA at 1220.339 kb on - strand, within relA at 1220.339 kb on - strand, within relA at 1220.396 kb on + strand, within relA at 1220.396 kb on + strand, within relA at 1220.396 kb on + strand, within relA at 1220.397 kb on - strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.497 kb on + strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.498 kb on - strand, within relA at 1220.546 kb on + strand, within relA at 1220.556 kb on + strand, within relA at 1220.638 kb on + strand, within relA at 1220.640 kb on + strand, within relA at 1220.641 kb on - strand, within relA at 1220.716 kb on - strand, within relA at 1220.865 kb on + strand, within relA at 1220.928 kb on + strand, within relA at 1220.933 kb on - strand, within relA at 1220.940 kb on - strand, within relA at 1220.964 kb on + strand, within relA at 1221.136 kb on - strand, within relA at 1221.175 kb on + strand, within relA at 1221.465 kb on + strand, within relA at 1221.651 kb on - strand at 1221.702 kb on + strand at 1221.718 kb on + strand at 1221.718 kb on + strand at 1221.819 kb on + strand, within LU632_RS06355 at 1221.907 kb on - strand, within LU632_RS06355 at 1221.956 kb on + strand, within LU632_RS06355 at 1221.957 kb on - strand, within LU632_RS06355 at 1221.961 kb on + strand, within LU632_RS06355 at 1222.084 kb on + strand, within mazG at 1222.084 kb on + strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.187 kb on + strand, within mazG at 1222.188 kb on - strand, within mazG at 1222.204 kb on + strand, within mazG at 1222.213 kb on - strand, within mazG at 1222.236 kb on + strand, within mazG at 1222.255 kb on - strand, within mazG at 1222.293 kb on + strand, within mazG at 1222.294 kb on - strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.410 kb on + strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.630 kb on - strand, within mazG at 1222.781 kb on - strand at 1222.781 kb on - strand at 1222.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 1,218,584 - rlmD LU632_RS06345 0.27 -1.7 1,218,590 + rlmD LU632_RS06345 0.28 -0.3 1,218,590 + rlmD LU632_RS06345 0.28 -0.3 1,218,590 + rlmD LU632_RS06345 0.28 +0.1 1,218,591 - rlmD LU632_RS06345 0.28 -1.0 1,218,591 - rlmD LU632_RS06345 0.28 -3.0 1,218,642 + rlmD LU632_RS06345 0.32 +1.1 1,218,642 + rlmD LU632_RS06345 0.32 +0.7 1,218,642 + rlmD LU632_RS06345 0.32 -1.0 1,218,716 + rlmD LU632_RS06345 0.37 +0.2 1,218,716 + rlmD LU632_RS06345 0.37 +0.8 1,218,717 - rlmD LU632_RS06345 0.37 -1.3 1,218,746 + rlmD LU632_RS06345 0.39 -1.3 1,218,746 + rlmD LU632_RS06345 0.39 +0.8 1,218,746 + rlmD LU632_RS06345 0.39 -0.5 1,218,754 + rlmD LU632_RS06345 0.40 -0.0 1,218,834 - rlmD LU632_RS06345 0.46 -0.7 1,218,914 + rlmD LU632_RS06345 0.52 -0.9 1,218,955 + rlmD LU632_RS06345 0.55 -2.5 1,219,029 - rlmD LU632_RS06345 0.61 +0.5 1,219,079 - rlmD LU632_RS06345 0.64 +0.9 1,219,089 - rlmD LU632_RS06345 0.65 -2.9 1,219,111 + rlmD LU632_RS06345 0.67 -1.4 1,219,140 - rlmD LU632_RS06345 0.69 +1.9 1,219,194 - rlmD LU632_RS06345 0.73 -1.0 1,219,198 + rlmD LU632_RS06345 0.73 -0.3 1,219,233 - rlmD LU632_RS06345 0.76 +0.3 1,219,242 - rlmD LU632_RS06345 0.76 -0.3 1,219,263 - rlmD LU632_RS06345 0.78 -1.0 1,219,280 - rlmD LU632_RS06345 0.79 -0.6 1,219,364 + rlmD LU632_RS06345 0.86 -2.5 1,219,364 + rlmD LU632_RS06345 0.86 +0.6 1,219,364 + rlmD LU632_RS06345 0.86 +0.1 1,219,365 - rlmD LU632_RS06345 0.86 +0.1 1,219,365 - rlmD LU632_RS06345 0.86 +0.9 1,219,396 - rlmD LU632_RS06345 0.88 -1.0 1,219,407 - rlmD LU632_RS06345 0.89 +0.5 1,219,416 - rlmD LU632_RS06345 0.89 -1.3 1,219,484 + +0.1 1,219,485 - -0.3 1,219,485 - +1.5 1,219,485 - +1.0 1,219,523 - +0.4 1,219,526 + +2.1 1,219,925 + relA LU632_RS06350 0.16 +0.3 1,219,981 - relA LU632_RS06350 0.18 -1.3 1,219,981 - relA LU632_RS06350 0.18 +6.1 1,220,037 + relA LU632_RS06350 0.21 +0.9 1,220,037 + relA LU632_RS06350 0.21 +0.7 1,220,038 - relA LU632_RS06350 0.21 +0.3 1,220,038 - relA LU632_RS06350 0.21 +0.0 1,220,110 - relA LU632_RS06350 0.24 +0.4 1,220,110 - relA LU632_RS06350 0.24 +0.7 1,220,110 - relA LU632_RS06350 0.24 +1.2 1,220,110 - relA LU632_RS06350 0.24 +0.2 1,220,114 - relA LU632_RS06350 0.24 +2.2 1,220,114 - relA LU632_RS06350 0.24 +0.7 1,220,182 + relA LU632_RS06350 0.27 -2.9 1,220,200 + relA LU632_RS06350 0.28 +1.1 1,220,201 - relA LU632_RS06350 0.28 +2.2 1,220,201 - relA LU632_RS06350 0.28 +0.7 1,220,203 - relA LU632_RS06350 0.28 +1.7 1,220,203 - relA LU632_RS06350 0.28 +0.7 1,220,203 - relA LU632_RS06350 0.28 +0.5 1,220,251 + relA LU632_RS06350 0.31 +3.8 1,220,251 + relA LU632_RS06350 0.31 -0.7 1,220,252 - relA LU632_RS06350 0.31 +0.5 1,220,252 - relA LU632_RS06350 0.31 +0.4 1,220,334 + relA LU632_RS06350 0.34 +0.1 1,220,334 + relA LU632_RS06350 0.34 +0.7 1,220,334 + relA LU632_RS06350 0.34 -0.5 1,220,334 + relA LU632_RS06350 0.34 -0.5 1,220,334 + relA LU632_RS06350 0.34 -0.8 1,220,334 + relA LU632_RS06350 0.34 +0.5 1,220,335 - relA LU632_RS06350 0.34 +1.6 1,220,339 - relA LU632_RS06350 0.34 +4.4 1,220,339 - relA LU632_RS06350 0.34 -0.3 1,220,396 + relA LU632_RS06350 0.37 -3.4 1,220,396 + relA LU632_RS06350 0.37 +0.8 1,220,396 + relA LU632_RS06350 0.37 -0.8 1,220,397 - relA LU632_RS06350 0.37 +0.7 1,220,497 + relA LU632_RS06350 0.42 +1.8 1,220,497 + relA LU632_RS06350 0.42 +1.0 1,220,497 + relA LU632_RS06350 0.42 +1.3 1,220,497 + relA LU632_RS06350 0.42 +3.5 1,220,498 - relA LU632_RS06350 0.42 -0.2 1,220,498 - relA LU632_RS06350 0.42 +1.3 1,220,498 - relA LU632_RS06350 0.42 +0.9 1,220,498 - relA LU632_RS06350 0.42 -1.9 1,220,498 - relA LU632_RS06350 0.42 +2.2 1,220,546 + relA LU632_RS06350 0.44 +0.2 1,220,556 + relA LU632_RS06350 0.44 -0.0 1,220,638 + relA LU632_RS06350 0.48 +2.5 1,220,640 + relA LU632_RS06350 0.48 +0.3 1,220,641 - relA LU632_RS06350 0.48 -1.9 1,220,716 - relA LU632_RS06350 0.51 +2.5 1,220,865 + relA LU632_RS06350 0.58 -1.3 1,220,928 + relA LU632_RS06350 0.61 +1.2 1,220,933 - relA LU632_RS06350 0.61 +1.2 1,220,940 - relA LU632_RS06350 0.61 +1.4 1,220,964 + relA LU632_RS06350 0.63 +2.8 1,221,136 - relA LU632_RS06350 0.70 +0.1 1,221,175 + relA LU632_RS06350 0.72 +1.9 1,221,465 + relA LU632_RS06350 0.85 -1.3 1,221,651 - +1.5 1,221,702 + +0.5 1,221,718 + -1.9 1,221,718 + -2.1 1,221,819 + LU632_RS06355 0.18 +0.5 1,221,907 - LU632_RS06355 0.58 -0.3 1,221,956 + LU632_RS06355 0.81 -1.3 1,221,957 - LU632_RS06355 0.81 +3.5 1,221,961 + LU632_RS06355 0.83 +0.4 1,222,084 + mazG LU632_RS06360 0.11 -1.5 1,222,084 + mazG LU632_RS06360 0.11 +0.3 1,222,085 - mazG LU632_RS06360 0.11 +0.0 1,222,085 - mazG LU632_RS06360 0.11 +1.2 1,222,187 + mazG LU632_RS06360 0.24 -0.3 1,222,188 - mazG LU632_RS06360 0.24 +0.1 1,222,204 + mazG LU632_RS06360 0.26 +0.2 1,222,213 - mazG LU632_RS06360 0.27 +0.2 1,222,236 + mazG LU632_RS06360 0.30 -0.3 1,222,255 - mazG LU632_RS06360 0.33 +0.2 1,222,293 + mazG LU632_RS06360 0.37 +0.4 1,222,294 - mazG LU632_RS06360 0.38 +0.5 1,222,403 + mazG LU632_RS06360 0.51 -0.9 1,222,403 + mazG LU632_RS06360 0.51 -1.0 1,222,404 - mazG LU632_RS06360 0.52 -0.9 1,222,404 - mazG LU632_RS06360 0.52 +0.6 1,222,410 + mazG LU632_RS06360 0.52 -0.7 1,222,508 - mazG LU632_RS06360 0.65 -0.8 1,222,508 - mazG LU632_RS06360 0.65 -1.1 1,222,627 - mazG LU632_RS06360 0.80 -2.1 1,222,627 - mazG LU632_RS06360 0.80 -0.4 1,222,630 - mazG LU632_RS06360 0.80 +1.8 1,222,781 - +0.5 1,222,781 - +2.6 1,222,798 - +0.0
Or see this region's nucleotide sequence