Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06215

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
1,190,145	+	argA	LU632_RS06210	0.46	-3.5
1,190,145	+	argA	LU632_RS06210	0.46	-1.9
1,190,171	+	argA	LU632_RS06210	0.48	-2.3
1,190,172	-	argA	LU632_RS06210	0.48	-3.0
1,190,199	-	argA	LU632_RS06210	0.50	+1.7
1,190,199	-	argA	LU632_RS06210	0.50	-0.1
1,190,256	-	argA	LU632_RS06210	0.54	-2.3
1,190,450	+	argA	LU632_RS06210	0.69	-0.3
1,190,451	-	argA	LU632_RS06210	0.69	-1.2
1,190,495	-	argA	LU632_RS06210	0.72	+0.7
1,190,495	-	argA	LU632_RS06210	0.72	-0.3
1,190,518	+	argA	LU632_RS06210	0.74	-2.8
1,190,519	-	argA	LU632_RS06210	0.74	-0.3
1,190,551	+	argA	LU632_RS06210	0.76	-2.3
1,190,685	+	argA	LU632_RS06210	0.86	-0.9
1,190,686	-	argA	LU632_RS06210	0.86	-1.9
1,190,686	-	argA	LU632_RS06210	0.86	+1.3
1,190,694	-	argA	LU632_RS06210	0.87	-1.3
1,190,728	+	argA	LU632_RS06210	0.89	-1.3
1,190,818	-				-2.6
1,190,872	+				-1.8
1,190,873	-				-1.9
1,190,873	-				-1.6
1,190,964	+				-0.6
1,190,964	+				-0.2
1,190,965	-				-2.5
1,190,965	-				+0.2
1,190,967	-				-1.6
1,191,093	+				+0.1
1,191,104	+				+0.5
1,191,528	+	amiC	LU632_RS06215	0.35	+1.2
1,191,528	+	amiC	LU632_RS06215	0.35	-1.3
1,191,528	+	amiC	LU632_RS06215	0.35	-0.8
1,191,528	+	amiC	LU632_RS06215	0.35	+1.8
1,191,529	-	amiC	LU632_RS06215	0.35	+0.9
1,191,529	-	amiC	LU632_RS06215	0.35	-0.6
1,191,529	-	amiC	LU632_RS06215	0.35	-0.5
1,191,529	-	amiC	LU632_RS06215	0.35	-1.9
1,191,529	-	amiC	LU632_RS06215	0.35	-0.6
1,191,580	+	amiC	LU632_RS06215	0.40	-1.7
1,191,581	-	amiC	LU632_RS06215	0.40	+0.4
1,191,582	+	amiC	LU632_RS06215	0.40	-0.6
1,191,583	-	amiC	LU632_RS06215	0.40	-0.0
1,191,583	-	amiC	LU632_RS06215	0.40	+0.6
1,191,583	-	amiC	LU632_RS06215	0.40	-1.1
1,191,583	-	amiC	LU632_RS06215	0.40	+0.1
1,191,714	+	amiC	LU632_RS06215	0.50	+2.2
1,191,715	-	amiC	LU632_RS06215	0.50	-2.3
1,191,715	-	amiC	LU632_RS06215	0.50	-1.3
1,191,715	-	amiC	LU632_RS06215	0.50	+0.3
1,191,715	-	amiC	LU632_RS06215	0.50	-0.7
1,191,819	-	amiC	LU632_RS06215	0.59	-0.8
1,191,819	-	amiC	LU632_RS06215	0.59	-0.9
1,191,819	-	amiC	LU632_RS06215	0.59	+0.9
1,191,876	+	amiC	LU632_RS06215	0.64	-0.4
1,191,882	+	amiC	LU632_RS06215	0.64	-2.8
1,191,900	+	amiC	LU632_RS06215	0.66	-0.2
1,191,974	-	amiC	LU632_RS06215	0.72	-2.8
1,192,003	-	amiC	LU632_RS06215	0.74	+0.4
1,192,037	-	amiC	LU632_RS06215	0.77	-0.9
1,192,047	+	amiC	LU632_RS06215	0.77	+1.3
1,192,047	+	amiC	LU632_RS06215	0.77	-1.2
1,192,060	-	amiC	LU632_RS06215	0.79	+0.2
1,192,078	-	amiC	LU632_RS06215	0.80	-2.1
1,192,078	-	amiC	LU632_RS06215	0.80	-0.8
1,192,115	+	amiC	LU632_RS06215	0.83	+0.4
1,192,115	+	amiC	LU632_RS06215	0.83	-1.6
1,192,115	+	amiC	LU632_RS06215	0.83	+2.7
1,192,116	-	amiC	LU632_RS06215	0.83	-0.9
1,192,116	-	amiC	LU632_RS06215	0.83	+1.4
1,192,119	+	amiC	LU632_RS06215	0.83	-0.3
1,192,119	+	amiC	LU632_RS06215	0.83	+0.6
1,192,120	-	amiC	LU632_RS06215	0.83	-0.3
1,192,120	-	amiC	LU632_RS06215	0.83	+0.7
1,192,120	-	amiC	LU632_RS06215	0.83	+1.4
1,192,120	-	amiC	LU632_RS06215	0.83	+0.3
1,192,192	-	amiC	LU632_RS06215	0.89	-2.3
1,192,221	+				+0.8
1,192,221	+				+0.0
1,192,245	+				-1.6
1,192,245	+				-0.1
1,192,246	-				-0.5
1,192,246	-				+0.8
1,192,246	-				-1.3
1,192,301	+				-0.7
1,192,342	-				-0.5
1,192,342	-				-1.0
1,192,345	+				+0.3
1,192,346	-				-0.9
1,192,346	-				+0.7
1,192,347	+				-2.2
1,192,449	+		LU632_RS06220	0.51	-1.6
1,192,449	+		LU632_RS06220	0.51	-0.0
1,192,502	+				-1.7
1,192,503	-				-0.6
1,192,587	+				+0.3
1,192,588	-				-1.9
1,192,588	-				-1.1
1,192,653	-				+0.9
1,192,736	-				-0.6
1,192,785	-				+0.7
1,192,786	+				+0.5
1,192,787	-				+1.2
1,192,906	+	mltA	LU632_RS06225	0.19	-0.3
1,192,907	-	mltA	LU632_RS06225	0.19	-0.9
1,192,927	+	mltA	LU632_RS06225	0.21	-1.9
1,192,931	+	mltA	LU632_RS06225	0.21	+0.7
1,192,932	-	mltA	LU632_RS06225	0.21	+0.5
1,192,999	+	mltA	LU632_RS06225	0.27	+1.7
1,193,003	+	mltA	LU632_RS06225	0.27	-0.8
1,193,004	-	mltA	LU632_RS06225	0.27	+1.3
1,193,004	-	mltA	LU632_RS06225	0.27	-2.5
1,193,028	-	mltA	LU632_RS06225	0.29	-0.8
1,193,055	-	mltA	LU632_RS06225	0.32	-0.3
1,193,055	-	mltA	LU632_RS06225	0.32	+0.8
1,193,055	-	mltA	LU632_RS06225	0.32	+0.4
1,193,055	-	mltA	LU632_RS06225	0.32	+0.6
1,193,055	-	mltA	LU632_RS06225	0.32	+0.7
1,193,055	-	mltA	LU632_RS06225	0.32	+2.0
1,193,056	+	mltA	LU632_RS06225	0.32	-2.1
1,193,056	+	mltA	LU632_RS06225	0.32	-1.6
1,193,057	-	mltA	LU632_RS06225	0.32	-0.5
1,193,146	+	mltA	LU632_RS06225	0.40	+1.9
1,193,159	+	mltA	LU632_RS06225	0.41	+0.6
1,193,160	-	mltA	LU632_RS06225	0.41	+0.6
1,193,183	+	mltA	LU632_RS06225	0.43	-0.9
1,193,216	-	mltA	LU632_RS06225	0.46	+0.1
1,193,247	-	mltA	LU632_RS06225	0.49	-0.3
1,193,247	-	mltA	LU632_RS06225	0.49	+1.2
1,193,247	-	mltA	LU632_RS06225	0.49	+0.2
1,193,255	+	mltA	LU632_RS06225	0.49	+2.5
1,193,297	-	mltA	LU632_RS06225	0.53	-2.3