Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trmB and LU632_RS05430 overlap by 1 nucleotides LU632_RS05430 and LU632_RS05435 are separated by 65 nucleotides LU632_RS05435 and LU632_RS05440 are separated by 60 nucleotides
LU632_RS05425: trmB - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 1,048,491 to 1,049,210
trmB
LU632_RS05430: LU632_RS05430 - YggL family protein, at 1,049,210 to 1,049,536
_RS05430
LU632_RS05435: LU632_RS05435 - DUF2884 domain-containing protein, at 1,049,602 to 1,050,321
_RS05435
LU632_RS05440: LU632_RS05440 - helix-turn-helix domain-containing protein, at 1,050,382 to 1,051,423
_RS05440
Position (kb) 1049
1050
1051 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1048.868 kb on + strand, within trmB at 1048.874 kb on + strand, within trmB at 1048.874 kb on + strand, within trmB at 1048.875 kb on - strand, within trmB at 1048.875 kb on - strand, within trmB at 1048.967 kb on - strand, within trmB at 1049.051 kb on + strand, within trmB at 1049.051 kb on + strand, within trmB at 1049.051 kb on + strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.073 kb on - strand, within trmB at 1049.109 kb on + strand, within trmB at 1049.109 kb on + strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.113 kb on + strand, within trmB at 1049.535 kb on - strand at 1049.607 kb on + strand at 1049.607 kb on + strand at 1049.630 kb on + strand at 1049.662 kb on + strand at 1049.714 kb on + strand, within LU632_RS05435 at 1049.714 kb on + strand, within LU632_RS05435 at 1049.715 kb on - strand, within LU632_RS05435 at 1049.998 kb on - strand, within LU632_RS05435 at 1050.044 kb on + strand, within LU632_RS05435 at 1050.045 kb on - strand, within LU632_RS05435 at 1050.084 kb on + strand, within LU632_RS05435 at 1050.085 kb on - strand, within LU632_RS05435 at 1050.291 kb on + strand at 1050.291 kb on + strand at 1050.292 kb on - strand at 1050.292 kb on - strand at 1050.330 kb on - strand at 1050.330 kb on - strand at 1050.383 kb on + strand at 1050.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 1,048,868 + trmB LU632_RS05425 0.52 +0.1 1,048,874 + trmB LU632_RS05425 0.53 -1.8 1,048,874 + trmB LU632_RS05425 0.53 +0.7 1,048,875 - trmB LU632_RS05425 0.53 -0.6 1,048,875 - trmB LU632_RS05425 0.53 -1.0 1,048,967 - trmB LU632_RS05425 0.66 +1.5 1,049,051 + trmB LU632_RS05425 0.78 -1.3 1,049,051 + trmB LU632_RS05425 0.78 -2.9 1,049,051 + trmB LU632_RS05425 0.78 +2.3 1,049,052 - trmB LU632_RS05425 0.78 -1.3 1,049,052 - trmB LU632_RS05425 0.78 -0.3 1,049,052 - trmB LU632_RS05425 0.78 -0.3 1,049,052 - trmB LU632_RS05425 0.78 +0.7 1,049,052 - trmB LU632_RS05425 0.78 -0.9 1,049,073 - trmB LU632_RS05425 0.81 +2.3 1,049,109 + trmB LU632_RS05425 0.86 -0.9 1,049,109 + trmB LU632_RS05425 0.86 +0.3 1,049,110 - trmB LU632_RS05425 0.86 -0.3 1,049,110 - trmB LU632_RS05425 0.86 +2.7 1,049,110 - trmB LU632_RS05425 0.86 +3.4 1,049,110 - trmB LU632_RS05425 0.86 -2.0 1,049,113 + trmB LU632_RS05425 0.86 -0.6 1,049,535 - +0.1 1,049,607 + -1.3 1,049,607 + +1.3 1,049,630 + +0.1 1,049,662 + +0.6 1,049,714 + LU632_RS05435 0.16 -1.0 1,049,714 + LU632_RS05435 0.16 -1.4 1,049,715 - LU632_RS05435 0.16 +0.5 1,049,998 - LU632_RS05435 0.55 -0.5 1,050,044 + LU632_RS05435 0.61 -1.6 1,050,045 - LU632_RS05435 0.62 -0.2 1,050,084 + LU632_RS05435 0.67 -0.8 1,050,085 - LU632_RS05435 0.67 -2.1 1,050,291 + -0.2 1,050,291 + -0.3 1,050,292 - +0.3 1,050,292 - +1.5 1,050,330 - +0.6 1,050,330 - -0.6 1,050,383 + -1.1 1,050,413 - +2.7
Or see this region's nucleotide sequence