Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05100 and LU632_RS05105 are separated by 10 nucleotides LU632_RS05105 and LU632_RS05110 are separated by 15 nucleotides LU632_RS05110 and LU632_RS05115 are separated by 164 nucleotides LU632_RS05115 and LU632_RS05120 overlap by 1 nucleotides LU632_RS05120 and LU632_RS05125 are separated by 38 nucleotides
LU632_RS05100: LU632_RS05100 - hypothetical protein, at 992,254 to 992,616
_RS05100
LU632_RS05105: LU632_RS05105 - DUF4225 domain-containing protein, at 992,627 to 993,478
_RS05105
LU632_RS05110: LU632_RS05110 - type VI secretion system tube protein Hcp, at 993,494 to 993,958
_RS05110
LU632_RS05115: LU632_RS05115 - hypothetical protein, at 994,123 to 994,470
_RS05115
LU632_RS05120: LU632_RS05120 - TIGR03758 family integrating conjugative element protein, at 994,470 to 994,712
_RS05120
LU632_RS05125: LU632_RS05125 - TIGR03745 family integrating conjugative element membrane protein, at 994,751 to 995,131
_RS05125
Position (kb) 993
994 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 992.749 kb on + strand, within LU632_RS05105 at 992.869 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.899 kb on - strand, within LU632_RS05105 at 992.920 kb on + strand, within LU632_RS05105 at 992.923 kb on + strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.924 kb on - strand, within LU632_RS05105 at 992.958 kb on + strand, within LU632_RS05105 at 992.959 kb on - strand, within LU632_RS05105 at 992.959 kb on - strand, within LU632_RS05105 at 992.989 kb on - strand, within LU632_RS05105 at 993.013 kb on - strand, within LU632_RS05105 at 993.030 kb on + strand, within LU632_RS05105 at 993.031 kb on - strand, within LU632_RS05105 at 993.044 kb on + strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.045 kb on - strand, within LU632_RS05105 at 993.092 kb on - strand, within LU632_RS05105 at 993.092 kb on - strand, within LU632_RS05105 at 993.157 kb on - strand, within LU632_RS05105 at 993.252 kb on - strand, within LU632_RS05105 at 993.357 kb on + strand, within LU632_RS05105 at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.432 kb on + strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.433 kb on - strand at 993.462 kb on + strand at 993.462 kb on + strand at 993.466 kb on + strand at 993.467 kb on - strand at 993.467 kb on - strand at 993.467 kb on - strand at 993.502 kb on - strand at 993.502 kb on - strand at 993.504 kb on + strand at 993.504 kb on + strand at 993.505 kb on - strand at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.873 kb on + strand, within LU632_RS05110 at 994.122 kb on + strand at 994.122 kb on + strand at 994.123 kb on - strand at 994.435 kb on + strand, within LU632_RS05115 at 994.435 kb on + strand, within LU632_RS05115 at 994.436 kb on - strand at 994.436 kb on - strand at 994.450 kb on + strand at 994.503 kb on - strand, within LU632_RS05120 at 994.685 kb on + strand, within LU632_RS05120 at 994.716 kb on + strand at 994.716 kb on + strand at 994.717 kb on - strand at 994.750 kb on + strand at 994.751 kb on - strand at 994.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 992,749 + LU632_RS05105 0.14 +4.1 992,869 - LU632_RS05105 0.28 -2.9 992,899 - LU632_RS05105 0.32 -0.4 992,899 - LU632_RS05105 0.32 -1.0 992,899 - LU632_RS05105 0.32 +1.4 992,920 + LU632_RS05105 0.34 +0.0 992,923 + LU632_RS05105 0.35 +0.8 992,924 - LU632_RS05105 0.35 -1.8 992,924 - LU632_RS05105 0.35 -0.6 992,924 - LU632_RS05105 0.35 +0.2 992,958 + LU632_RS05105 0.39 +1.7 992,959 - LU632_RS05105 0.39 +2.1 992,959 - LU632_RS05105 0.39 -0.2 992,989 - LU632_RS05105 0.42 -1.9 993,013 - LU632_RS05105 0.45 -0.8 993,030 + LU632_RS05105 0.47 +0.2 993,031 - LU632_RS05105 0.47 +0.6 993,044 + LU632_RS05105 0.49 -1.1 993,045 - LU632_RS05105 0.49 -1.0 993,045 - LU632_RS05105 0.49 +0.9 993,045 - LU632_RS05105 0.49 +0.9 993,092 - LU632_RS05105 0.55 -1.9 993,092 - LU632_RS05105 0.55 -0.2 993,157 - LU632_RS05105 0.62 +1.2 993,252 - LU632_RS05105 0.73 +0.8 993,357 + LU632_RS05105 0.86 +0.8 993,432 + -1.8 993,432 + -3.8 993,432 + -2.9 993,432 + +1.3 993,432 + -0.2 993,433 - +0.7 993,433 - +0.8 993,433 - -0.3 993,433 - -0.1 993,462 + +1.7 993,462 + +0.8 993,466 + +0.2 993,467 - -2.6 993,467 - +1.0 993,467 - +2.2 993,502 - -0.5 993,502 - -1.9 993,504 + -0.4 993,504 + -0.1 993,505 - -0.1 993,817 - LU632_RS05110 0.69 -1.2 993,817 - LU632_RS05110 0.69 +2.5 993,817 - LU632_RS05110 0.69 +0.8 993,817 - LU632_RS05110 0.69 -1.5 993,817 - LU632_RS05110 0.69 -1.2 993,817 - LU632_RS05110 0.69 +0.0 993,873 + LU632_RS05110 0.82 -0.6 994,122 + -0.7 994,122 + -0.8 994,123 - -2.2 994,435 + LU632_RS05115 0.90 -1.6 994,435 + LU632_RS05115 0.90 +4.7 994,436 - -2.2 994,436 - -1.2 994,450 + -0.3 994,503 - LU632_RS05120 0.14 -0.9 994,685 + LU632_RS05120 0.88 -1.8 994,716 + -0.8 994,716 + +0.4 994,717 - -0.7 994,750 + +0.5 994,751 - +0.0 994,769 - +2.9
Or see this region's nucleotide sequence