Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05020

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05005 and LU632_RS05010 are separated by 30 nucleotidesLU632_RS05010 and LU632_RS05015 are separated by 9 nucleotidesLU632_RS05015 and LU632_RS05020 overlap by 4 nucleotidesLU632_RS05020 and LU632_RS05025 overlap by 1 nucleotidesLU632_RS05025 and LU632_RS05030 overlap by 5 nucleotides LU632_RS05005: LU632_RS05005 - TIGR03758 family integrating conjugative element protein, at 975,063 to 975,305 _RS05005 LU632_RS05010: LU632_RS05010 - TIGR03745 family integrating conjugative element membrane protein, at 975,336 to 975,722 _RS05010 LU632_RS05015: LU632_RS05015 - TIGR03750 family conjugal transfer protein, at 975,732 to 976,088 _RS05015 LU632_RS05020: LU632_RS05020 - TIGR03746 family integrating conjugative element protein, at 976,085 to 976,744 _RS05020 LU632_RS05025: LU632_RS05025 - TIGR03749 family integrating conjugative element protein, at 976,744 to 977,028 _RS05025 LU632_RS05030: LU632_RS05030 - TIGR03752 family integrating conjugative element protein, at 977,024 to 977,569 _RS05030 Position (kb) 976 977Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 975.285 kb on - strandat 975.313 kb on - strandat 975.336 kb on - strandat 975.398 kb on + strand, within LU632_RS05010at 975.463 kb on + strand, within LU632_RS05010at 975.464 kb on - strand, within LU632_RS05010at 975.464 kb on - strand, within LU632_RS05010at 975.536 kb on + strand, within LU632_RS05010at 975.550 kb on + strand, within LU632_RS05010at 975.572 kb on + strand, within LU632_RS05010at 975.713 kb on + strandat 975.713 kb on + strandat 975.863 kb on + strand, within LU632_RS05015at 975.863 kb on + strand, within LU632_RS05015at 975.863 kb on + strand, within LU632_RS05015at 975.864 kb on - strand, within LU632_RS05015at 975.904 kb on + strand, within LU632_RS05015at 975.905 kb on - strand, within LU632_RS05015at 975.978 kb on + strand, within LU632_RS05015at 975.979 kb on - strand, within LU632_RS05015at 975.980 kb on + strand, within LU632_RS05015at 976.126 kb on + strandat 976.173 kb on + strand, within LU632_RS05020at 976.236 kb on + strand, within LU632_RS05020at 976.301 kb on + strand, within LU632_RS05020at 976.301 kb on + strand, within LU632_RS05020at 976.302 kb on - strand, within LU632_RS05020at 976.670 kb on + strand, within LU632_RS05020at 976.911 kb on - strand, within LU632_RS05025at 977.189 kb on - strand, within LU632_RS05030at 977.223 kb on - strand, within LU632_RS05030at 977.223 kb on - strand, within LU632_RS05030at 977.288 kb on + strand, within LU632_RS05030at 977.288 kb on + strand, within LU632_RS05030at 977.289 kb on - strand, within LU632_RS05030at 977.289 kb on - strand, within LU632_RS05030at 977.289 kb on - strand, within LU632_RS05030at 977.302 kb on + strand, within LU632_RS05030at 977.302 kb on + strand, within LU632_RS05030at 977.303 kb on - strand, within LU632_RS05030at 977.303 kb on - strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.436 kb on - strand, within LU632_RS05030at 977.440 kb on - strand, within LU632_RS05030at 977.440 kb on - strand, within LU632_RS05030at 977.463 kb on + strand, within LU632_RS05030at 977.463 kb on + strand, within LU632_RS05030at 977.464 kb on - strand, within LU632_RS05030at 977.464 kb on - strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.468 kb on - strand, within LU632_RS05030at 977.468 kb on - strand, within LU632_RS05030at 977.468 kb on - strand, within LU632_RS05030at 977.500 kb on + strand, within LU632_RS05030

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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975,285 - -1.6
975,313 - -0.7
975,336 - +2.8
975,398 + LU632_RS05010 0.16 +1.2
975,463 + LU632_RS05010 0.33 -0.4
975,464 - LU632_RS05010 0.33 +1.0
975,464 - LU632_RS05010 0.33 -0.8
975,536 + LU632_RS05010 0.52 -1.2
975,550 + LU632_RS05010 0.55 -0.6
975,572 + LU632_RS05010 0.61 -0.6
975,713 + +0.0
975,713 + -0.1
975,863 + LU632_RS05015 0.37 +1.7
975,863 + LU632_RS05015 0.37 +1.5
975,863 + LU632_RS05015 0.37 -0.2
975,864 - LU632_RS05015 0.37 +0.1
975,904 + LU632_RS05015 0.48 +0.0
975,905 - LU632_RS05015 0.48 -0.1
975,978 + LU632_RS05015 0.69 -0.2
975,979 - LU632_RS05015 0.69 +0.7
975,980 + LU632_RS05015 0.69 +0.8
976,126 + -0.2
976,173 + LU632_RS05020 0.13 +3.3
976,236 + LU632_RS05020 0.23 -2.2
976,301 + LU632_RS05020 0.33 +1.9
976,301 + LU632_RS05020 0.33 -1.7
976,302 - LU632_RS05020 0.33 -1.1
976,670 + LU632_RS05020 0.89 +0.5
976,911 - LU632_RS05025 0.59 +0.6
977,189 - LU632_RS05030 0.30 +0.9
977,223 - LU632_RS05030 0.36 +1.3
977,223 - LU632_RS05030 0.36 -0.5
977,288 + LU632_RS05030 0.48 -2.4
977,288 + LU632_RS05030 0.48 -0.6
977,289 - LU632_RS05030 0.49 -1.6
977,289 - LU632_RS05030 0.49 -1.4
977,289 - LU632_RS05030 0.49 -2.6
977,302 + LU632_RS05030 0.51 +0.8
977,302 + LU632_RS05030 0.51 -1.9
977,303 - LU632_RS05030 0.51 -1.8
977,303 - LU632_RS05030 0.51 -3.1
977,435 + LU632_RS05030 0.75 -2.6
977,435 + LU632_RS05030 0.75 +1.6
977,435 + LU632_RS05030 0.75 -1.2
977,435 + LU632_RS05030 0.75 -0.0
977,436 - LU632_RS05030 0.75 -0.8
977,440 - LU632_RS05030 0.76 +0.8
977,440 - LU632_RS05030 0.76 -0.2
977,463 + LU632_RS05030 0.80 +1.2
977,463 + LU632_RS05030 0.80 -1.1
977,464 - LU632_RS05030 0.81 -0.2
977,464 - LU632_RS05030 0.81 +0.0
977,467 + LU632_RS05030 0.81 +0.9
977,467 + LU632_RS05030 0.81 -1.2
977,467 + LU632_RS05030 0.81 +2.3
977,467 + LU632_RS05030 0.81 +0.8
977,468 - LU632_RS05030 0.81 +2.0
977,468 - LU632_RS05030 0.81 +0.6
977,468 - LU632_RS05030 0.81 -0.6
977,500 + LU632_RS05030 0.87 -0.9

Or see this region's nucleotide sequence