Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04200 and LU632_RS04205 are separated by 660 nucleotides LU632_RS04205 and LU632_RS04210 are separated by 24 nucleotides LU632_RS04210 and LU632_RS04215 are separated by 160 nucleotides
LU632_RS04200: LU632_RS04200 - AraC family ligand binding domain-containing protein, at 834,803 to 835,315
_RS04200
LU632_RS04205: LU632_RS04205 - hypothetical protein, at 835,976 to 836,155
_RS04205
LU632_RS04210: LU632_RS04210 - 2OG-Fe dioxygenase family protein, at 836,180 to 836,524
_RS04210
LU632_RS04215: LU632_RS04215 - lysine exporter LysO family protein, at 836,685 to 837,575
_RS04215
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 835.004 kb on - strand, within LU632_RS04200 at 835.004 kb on - strand, within LU632_RS04200 at 835.010 kb on - strand, within LU632_RS04200 at 835.031 kb on + strand, within LU632_RS04200 at 835.088 kb on - strand, within LU632_RS04200 at 835.357 kb on - strand at 836.054 kb on + strand, within LU632_RS04205 at 836.522 kb on + strand at 836.545 kb on + strand at 836.556 kb on + strand at 836.603 kb on + strand at 837.075 kb on - strand, within LU632_RS04215 at 837.098 kb on - strand, within LU632_RS04215 at 837.102 kb on + strand, within LU632_RS04215 at 837.103 kb on - strand, within LU632_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 835,004 - LU632_RS04200 0.39 -1.2 835,004 - LU632_RS04200 0.39 -0.4 835,010 - LU632_RS04200 0.40 -0.1 835,031 + LU632_RS04200 0.44 -0.2 835,088 - LU632_RS04200 0.56 +0.1 835,357 - +0.8 836,054 + LU632_RS04205 0.43 -2.7 836,522 + +0.9 836,545 + +2.0 836,556 + -2.3 836,603 + +0.6 837,075 - LU632_RS04215 0.44 -0.2 837,098 - LU632_RS04215 0.46 -1.3 837,102 + LU632_RS04215 0.47 +2.6 837,103 - LU632_RS04215 0.47 +2.8
Or see this region's nucleotide sequence