Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04150

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntistA and istB are separated by 10 nucleotidesistB and LU632_RS04155 are separated by 554 nucleotides LU632_RS04145: istA - IS21 family transposase, at 820,998 to 822,527 istA LU632_RS04150: istB - IS21-like element helper ATPase IstB, at 822,538 to 823,281 istB LU632_RS04155: LU632_RS04155 - polysaccharide lyase family protein, at 823,836 to 825,554 _RS04155 Position (kb) 822 823 824Strain fitness (log2 ratio) -2 -1 0 1 2 3at 822.988 kb on + strand, within istBat 823.392 kb on - strandat 823.550 kb on + strandat 823.551 kb on - strandat 823.890 kb on + strandat 823.898 kb on + strandat 823.994 kb on + strandat 823.994 kb on + strandat 823.995 kb on - strandat 824.016 kb on - strand, within LU632_RS04155at 824.157 kb on - strand, within LU632_RS04155at 824.168 kb on + strand, within LU632_RS04155at 824.210 kb on + strand, within LU632_RS04155at 824.211 kb on - strand, within LU632_RS04155at 824.236 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.238 kb on - strand, within LU632_RS04155at 824.242 kb on - strand, within LU632_RS04155

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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822,988 + istB LU632_RS04150 0.60 +2.1
823,392 - +1.2
823,550 + -0.9
823,551 - -0.9
823,890 + -0.2
823,898 + -0.0
823,994 + +0.4
823,994 + -2.2
823,995 - +0.8
824,016 - LU632_RS04155 0.10 +0.8
824,157 - LU632_RS04155 0.19 -1.5
824,168 + LU632_RS04155 0.19 -0.3
824,210 + LU632_RS04155 0.22 -0.8
824,211 - LU632_RS04155 0.22 -0.4
824,236 - LU632_RS04155 0.23 +0.1
824,238 - LU632_RS04155 0.23 +2.8
824,238 - LU632_RS04155 0.23 +0.8
824,238 - LU632_RS04155 0.23 +0.2
824,238 - LU632_RS04155 0.23 +0.9
824,238 - LU632_RS04155 0.23 +1.0
824,242 - LU632_RS04155 0.24 -0.1

Or see this region's nucleotide sequence