Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03515

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03495 and LU632_RS03500 are separated by 7 nucleotidesLU632_RS03500 and LU632_RS03505 overlap by 37 nucleotidesLU632_RS03505 and LU632_RS03510 are separated by 67 nucleotidesLU632_RS03510 and LU632_RS03515 overlap by 1 nucleotidesLU632_RS03515 and LU632_RS03520 are separated by 1 nucleotidesLU632_RS03520 and LU632_RS03525 overlap by 4 nucleotidesLU632_RS03525 and LU632_RS03530 overlap by 8 nucleotides LU632_RS03495: LU632_RS03495 - phage regulatory CII family protein, at 711,478 to 711,987 _RS03495 LU632_RS03500: LU632_RS03500 - DUF2724 domain-containing protein, at 711,995 to 712,195 _RS03500 LU632_RS03505: LU632_RS03505 - DUF5347 domain-containing protein, at 712,159 to 712,497 _RS03505 LU632_RS03510: LU632_RS03510 - DUF2732 domain-containing protein, at 712,565 to 712,792 _RS03510 LU632_RS03515: LU632_RS03515 - TraR/DksA family transcriptional regulator, at 712,792 to 713,013 _RS03515 LU632_RS03520: LU632_RS03520 - 3'-5' exonuclease, at 713,015 to 713,722 _RS03520 LU632_RS03525: LU632_RS03525 - DUF5405 family protein, at 713,719 to 714,000 _RS03525 LU632_RS03530: LU632_RS03530 - replication endonuclease, at 713,993 to 716,218 _RS03530 Position (kb) 712 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 711.994 kb on + strandat 711.994 kb on + strandat 711.995 kb on - strandat 712.139 kb on - strand, within LU632_RS03500at 712.212 kb on + strand, within LU632_RS03505at 712.228 kb on - strand, within LU632_RS03505at 712.238 kb on + strand, within LU632_RS03505at 712.239 kb on - strand, within LU632_RS03505at 712.239 kb on - strand, within LU632_RS03505at 712.239 kb on - strand, within LU632_RS03505at 712.347 kb on + strand, within LU632_RS03505at 712.395 kb on - strand, within LU632_RS03505at 712.431 kb on + strand, within LU632_RS03505at 712.851 kb on - strand, within LU632_RS03515at 712.851 kb on - strand, within LU632_RS03515at 712.851 kb on - strand, within LU632_RS03515at 712.851 kb on - strand, within LU632_RS03515at 713.053 kb on - strandat 713.198 kb on - strand, within LU632_RS03520at 713.291 kb on - strand, within LU632_RS03520at 713.311 kb on + strand, within LU632_RS03520at 713.326 kb on + strand, within LU632_RS03520at 713.404 kb on - strand, within LU632_RS03520at 713.404 kb on - strand, within LU632_RS03520at 713.422 kb on - strand, within LU632_RS03520at 713.422 kb on - strand, within LU632_RS03520at 713.424 kb on + strand, within LU632_RS03520at 713.445 kb on - strand, within LU632_RS03520at 713.445 kb on - strand, within LU632_RS03520at 713.507 kb on + strand, within LU632_RS03520at 713.531 kb on - strand, within LU632_RS03520at 713.541 kb on - strand, within LU632_RS03520at 713.550 kb on - strand, within LU632_RS03520at 713.550 kb on - strand, within LU632_RS03520at 713.611 kb on + strand, within LU632_RS03520at 713.735 kb on + strandat 713.736 kb on - strandat 713.736 kb on - strandat 713.738 kb on + strandat 713.739 kb on - strandat 713.885 kb on + strand, within LU632_RS03525at 713.886 kb on - strand, within LU632_RS03525at 713.914 kb on - strand, within LU632_RS03525at 713.960 kb on + strand, within LU632_RS03525at 713.961 kb on - strand, within LU632_RS03525at 713.961 kb on - strand, within LU632_RS03525at 713.961 kb on - strand, within LU632_RS03525at 713.998 kb on + strandat 713.998 kb on + strandat 713.998 kb on + strandat 713.998 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
remove
711,994 + -1.1
711,994 + +0.1
711,995 - +0.4
712,139 - LU632_RS03500 0.72 -0.3
712,212 + LU632_RS03505 0.16 -0.1
712,228 - LU632_RS03505 0.20 +0.6
712,238 + LU632_RS03505 0.23 -0.6
712,239 - LU632_RS03505 0.24 -2.1
712,239 - LU632_RS03505 0.24 +0.4
712,239 - LU632_RS03505 0.24 -0.4
712,347 + LU632_RS03505 0.55 -1.0
712,395 - LU632_RS03505 0.70 -1.0
712,431 + LU632_RS03505 0.80 -1.6
712,851 - LU632_RS03515 0.27 +1.9
712,851 - LU632_RS03515 0.27 +1.5
712,851 - LU632_RS03515 0.27 +2.1
712,851 - LU632_RS03515 0.27 -0.6
713,053 - -1.1
713,198 - LU632_RS03520 0.26 -0.1
713,291 - LU632_RS03520 0.39 +1.2
713,311 + LU632_RS03520 0.42 -0.6
713,326 + LU632_RS03520 0.44 -0.2
713,404 - LU632_RS03520 0.55 +0.0
713,404 - LU632_RS03520 0.55 -0.8
713,422 - LU632_RS03520 0.57 -0.6
713,422 - LU632_RS03520 0.57 -0.6
713,424 + LU632_RS03520 0.58 -0.5
713,445 - LU632_RS03520 0.61 +1.1
713,445 - LU632_RS03520 0.61 -1.8
713,507 + LU632_RS03520 0.69 +3.2
713,531 - LU632_RS03520 0.73 +0.5
713,541 - LU632_RS03520 0.74 -2.7
713,550 - LU632_RS03520 0.76 -1.1
713,550 - LU632_RS03520 0.76 +3.3
713,611 + LU632_RS03520 0.84 -2.3
713,735 + +0.6
713,736 - -0.8
713,736 - +0.4
713,738 + +1.0
713,739 - -0.4
713,885 + LU632_RS03525 0.59 -1.7
713,886 - LU632_RS03525 0.59 -0.7
713,914 - LU632_RS03525 0.69 +0.7
713,960 + LU632_RS03525 0.85 -0.5
713,961 - LU632_RS03525 0.86 -3.2
713,961 - LU632_RS03525 0.86 +0.2
713,961 - LU632_RS03525 0.86 -0.4
713,998 + +0.6
713,998 + -0.3
713,998 + +3.6
713,998 + -0.3

Or see this region's nucleotide sequence