Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03385

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03370 and LU632_RS03375 are separated by 4 nucleotidesLU632_RS03375 and LU632_RS03380 overlap by 4 nucleotidesLU632_RS03380 and LU632_RS03385 are separated by 213 nucleotidesLU632_RS03385 and LU632_RS03390 are separated by 68 nucleotides LU632_RS03370: LU632_RS03370 - integrase, at 692,407 to 692,592 _RS03370 LU632_RS03375: LU632_RS03375 - Fic family protein, at 692,597 to 693,211 _RS03375 LU632_RS03380: LU632_RS03380 - hypothetical protein, at 693,208 to 693,366 _RS03380 LU632_RS03385: LU632_RS03385 - HNH endonuclease, at 693,580 to 693,852 _RS03385 LU632_RS03390: LU632_RS03390 - IS3 family transposase, at 693,921 to 695,041 _RS03390 Position (kb) 693 694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 692.614 kb on + strandat 692.615 kb on - strandat 692.615 kb on - strandat 692.615 kb on - strandat 692.665 kb on + strand, within LU632_RS03375at 692.666 kb on - strand, within LU632_RS03375at 692.668 kb on + strand, within LU632_RS03375at 692.668 kb on + strand, within LU632_RS03375at 692.742 kb on + strand, within LU632_RS03375at 692.742 kb on + strand, within LU632_RS03375at 692.743 kb on - strand, within LU632_RS03375at 692.785 kb on + strand, within LU632_RS03375at 692.785 kb on + strand, within LU632_RS03375at 692.786 kb on - strand, within LU632_RS03375at 692.822 kb on + strand, within LU632_RS03375at 692.823 kb on - strand, within LU632_RS03375at 692.823 kb on - strand, within LU632_RS03375at 692.856 kb on + strand, within LU632_RS03375at 692.860 kb on + strand, within LU632_RS03375at 692.958 kb on + strand, within LU632_RS03375at 693.167 kb on + strandat 693.168 kb on - strandat 693.168 kb on - strandat 693.168 kb on - strandat 693.196 kb on + strandat 693.197 kb on - strandat 693.197 kb on - strandat 693.198 kb on + strandat 693.199 kb on - strandat 693.199 kb on - strandat 693.399 kb on - strandat 693.474 kb on + strandat 693.527 kb on - strandat 693.561 kb on - strandat 693.596 kb on - strandat 693.679 kb on + strand, within LU632_RS03385at 693.680 kb on - strand, within LU632_RS03385at 693.680 kb on - strand, within LU632_RS03385at 693.680 kb on - strand, within LU632_RS03385at 693.680 kb on - strand, within LU632_RS03385at 693.712 kb on - strand, within LU632_RS03385at 693.712 kb on - strand, within LU632_RS03385at 693.712 kb on - strand, within LU632_RS03385at 693.726 kb on + strand, within LU632_RS03385at 693.740 kb on + strand, within LU632_RS03385at 693.740 kb on + strand, within LU632_RS03385at 693.740 kb on + strand, within LU632_RS03385at 693.741 kb on - strand, within LU632_RS03385at 693.764 kb on + strand, within LU632_RS03385at 693.765 kb on - strand, within LU632_RS03385at 693.765 kb on - strand, within LU632_RS03385at 693.765 kb on - strand, within LU632_RS03385at 693.765 kb on - strand, within LU632_RS03385at 693.765 kb on - strand, within LU632_RS03385at 693.765 kb on - strand, within LU632_RS03385at 693.811 kb on + strand, within LU632_RS03385at 693.811 kb on + strand, within LU632_RS03385at 693.873 kb on - strandat 693.873 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
remove
692,614 + -0.3
692,615 - +0.8
692,615 - -2.1
692,615 - +1.9
692,665 + LU632_RS03375 0.11 -0.3
692,666 - LU632_RS03375 0.11 -2.5
692,668 + LU632_RS03375 0.12 +1.6
692,668 + LU632_RS03375 0.12 +0.4
692,742 + LU632_RS03375 0.24 +0.2
692,742 + LU632_RS03375 0.24 +0.6
692,743 - LU632_RS03375 0.24 +0.1
692,785 + LU632_RS03375 0.31 -0.5
692,785 + LU632_RS03375 0.31 +1.0
692,786 - LU632_RS03375 0.31 +0.7
692,822 + LU632_RS03375 0.37 +3.1
692,823 - LU632_RS03375 0.37 -0.7
692,823 - LU632_RS03375 0.37 -0.7
692,856 + LU632_RS03375 0.42 -2.6
692,860 + LU632_RS03375 0.43 -2.5
692,958 + LU632_RS03375 0.59 -0.1
693,167 + +5.5
693,168 - -0.2
693,168 - +1.9
693,168 - -0.1
693,196 + -0.1
693,197 - +0.2
693,197 - +0.9
693,198 + +1.1
693,199 - -0.1
693,199 - +2.9
693,399 - +0.5
693,474 + -0.5
693,527 - -2.8
693,561 - +1.0
693,596 - +2.2
693,679 + LU632_RS03385 0.36 -1.2
693,680 - LU632_RS03385 0.37 +1.9
693,680 - LU632_RS03385 0.37 -2.5
693,680 - LU632_RS03385 0.37 +0.1
693,680 - LU632_RS03385 0.37 +0.8
693,712 - LU632_RS03385 0.48 -1.7
693,712 - LU632_RS03385 0.48 -0.6
693,712 - LU632_RS03385 0.48 -1.5
693,726 + LU632_RS03385 0.53 +0.9
693,740 + LU632_RS03385 0.59 -2.1
693,740 + LU632_RS03385 0.59 -0.0
693,740 + LU632_RS03385 0.59 -0.5
693,741 - LU632_RS03385 0.59 -1.5
693,764 + LU632_RS03385 0.67 -1.5
693,765 - LU632_RS03385 0.68 +0.7
693,765 - LU632_RS03385 0.68 +2.3
693,765 - LU632_RS03385 0.68 +0.2
693,765 - LU632_RS03385 0.68 +0.5
693,765 - LU632_RS03385 0.68 -0.4
693,765 - LU632_RS03385 0.68 -2.7
693,811 + LU632_RS03385 0.85 +0.7
693,811 + LU632_RS03385 0.85 -1.0
693,873 - -1.7
693,873 - -0.4

Or see this region's nucleotide sequence