Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03340 and LU632_RS03345 are separated by 99 nucleotides LU632_RS03345 and LU632_RS03350 are separated by 380 nucleotides
LU632_RS03340: LU632_RS03340 - iron ABC transporter permease, at 684,573 to 686,069
_RS03340
LU632_RS03345: LU632_RS03345 - iron ABC transporter substrate-binding protein, at 686,169 to 687,173
_RS03345
LU632_RS03350: LU632_RS03350 - IS5 family transposase, at 687,554 to 688,397
_RS03350
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 685.176 kb on + strand, within LU632_RS03340 at 685.446 kb on - strand, within LU632_RS03340 at 685.534 kb on + strand, within LU632_RS03340 at 685.654 kb on + strand, within LU632_RS03340 at 685.787 kb on - strand, within LU632_RS03340 at 685.860 kb on - strand, within LU632_RS03340 at 685.917 kb on - strand, within LU632_RS03340 at 686.069 kb on + strand at 686.302 kb on + strand, within LU632_RS03345 at 686.303 kb on - strand, within LU632_RS03345 at 686.420 kb on + strand, within LU632_RS03345 at 686.456 kb on - strand, within LU632_RS03345 at 686.458 kb on + strand, within LU632_RS03345 at 686.515 kb on + strand, within LU632_RS03345 at 686.521 kb on + strand, within LU632_RS03345 at 686.577 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 687.033 kb on - strand, within LU632_RS03345 at 687.204 kb on + strand at 687.205 kb on - strand at 687.295 kb on + strand at 687.381 kb on + strand at 687.382 kb on - strand at 687.424 kb on + strand at 687.425 kb on - strand at 687.457 kb on - strand at 687.467 kb on - strand at 687.475 kb on - strand at 687.503 kb on + strand at 687.513 kb on + strand at 687.513 kb on + strand at 687.513 kb on + strand at 687.514 kb on - strand at 687.514 kb on - strand at 687.555 kb on + strand at 687.560 kb on - strand at 687.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 685,176 + LU632_RS03340 0.40 -0.1 685,446 - LU632_RS03340 0.58 -0.1 685,534 + LU632_RS03340 0.64 +1.5 685,654 + LU632_RS03340 0.72 -0.7 685,787 - LU632_RS03340 0.81 +2.4 685,860 - LU632_RS03340 0.86 -0.9 685,917 - LU632_RS03340 0.90 +0.5 686,069 + -1.5 686,302 + LU632_RS03345 0.13 +0.3 686,303 - LU632_RS03345 0.13 +2.1 686,420 + LU632_RS03345 0.25 -2.3 686,456 - LU632_RS03345 0.29 +0.9 686,458 + LU632_RS03345 0.29 +1.6 686,515 + LU632_RS03345 0.34 -0.7 686,521 + LU632_RS03345 0.35 +3.4 686,577 - LU632_RS03345 0.41 +2.2 686,910 - LU632_RS03345 0.74 -1.0 686,910 - LU632_RS03345 0.74 +0.9 686,910 - LU632_RS03345 0.74 -0.7 687,033 - LU632_RS03345 0.86 -0.5 687,204 + +2.3 687,205 - -2.2 687,295 + +0.4 687,381 + -2.0 687,382 - -0.1 687,424 + -0.9 687,425 - -0.7 687,457 - +0.1 687,467 - -1.4 687,475 - -0.2 687,503 + +2.2 687,513 + -1.7 687,513 + +0.1 687,513 + -1.5 687,514 - -1.1 687,514 - -0.6 687,555 + -1.0 687,560 - +0.1 687,631 + +0.5
Or see this region's nucleotide sequence