Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctW and LU632_RS03185 are separated by 276 nucleotides LU632_RS03185 and LU632_RS03190 are separated by 144 nucleotides
LU632_RS03180: sctW - type III secretion system gatekeeper subunit SctW, at 650,984 to 652,150
sctW
LU632_RS03185: LU632_RS03185 - sigma-70 family RNA polymerase sigma factor, at 652,427 to 652,975
_RS03185
LU632_RS03190: LU632_RS03190 - PAS domain-containing sensor histidine kinase, at 653,120 to 654,619
_RS03190
Position (kb) 652
653 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 651.438 kb on - strand, within sctW at 651.438 kb on - strand, within sctW at 651.535 kb on - strand, within sctW at 651.538 kb on - strand, within sctW at 651.538 kb on - strand, within sctW at 651.723 kb on - strand, within sctW at 651.726 kb on - strand, within sctW at 651.726 kb on - strand, within sctW at 651.875 kb on + strand, within sctW at 651.952 kb on + strand, within sctW at 652.132 kb on + strand at 652.166 kb on + strand at 652.166 kb on + strand at 652.167 kb on - strand at 652.167 kb on - strand at 652.258 kb on - strand at 652.413 kb on + strand at 652.427 kb on - strand at 652.474 kb on + strand at 652.475 kb on - strand at 652.530 kb on + strand, within LU632_RS03185 at 652.531 kb on - strand, within LU632_RS03185 at 652.584 kb on + strand, within LU632_RS03185 at 652.606 kb on - strand, within LU632_RS03185 at 652.877 kb on + strand, within LU632_RS03185 at 652.877 kb on + strand, within LU632_RS03185 at 652.878 kb on - strand, within LU632_RS03185 at 652.965 kb on + strand at 652.966 kb on - strand at 653.207 kb on + strand at 653.237 kb on + strand at 653.237 kb on + strand at 653.271 kb on - strand, within LU632_RS03190 at 653.272 kb on + strand, within LU632_RS03190 at 653.273 kb on - strand, within LU632_RS03190 at 653.336 kb on - strand, within LU632_RS03190 at 653.336 kb on - strand, within LU632_RS03190 at 653.344 kb on + strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.460 kb on - strand, within LU632_RS03190 at 653.474 kb on + strand, within LU632_RS03190 at 653.474 kb on + strand, within LU632_RS03190 at 653.475 kb on - strand, within LU632_RS03190 at 653.514 kb on - strand, within LU632_RS03190 at 653.514 kb on - strand, within LU632_RS03190 at 653.514 kb on - strand, within LU632_RS03190 at 653.578 kb on + strand, within LU632_RS03190 at 653.597 kb on - strand, within LU632_RS03190 at 653.605 kb on + strand, within LU632_RS03190 at 653.615 kb on + strand, within LU632_RS03190 at 653.675 kb on - strand, within LU632_RS03190 at 653.675 kb on - strand, within LU632_RS03190 at 653.717 kb on - strand, within LU632_RS03190 at 653.717 kb on - strand, within LU632_RS03190 at 653.857 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 651,438 - sctW LU632_RS03180 0.39 -2.2 651,438 - sctW LU632_RS03180 0.39 -0.7 651,535 - sctW LU632_RS03180 0.47 -0.9 651,538 - sctW LU632_RS03180 0.47 -1.4 651,538 - sctW LU632_RS03180 0.47 -1.4 651,723 - sctW LU632_RS03180 0.63 -1.3 651,726 - sctW LU632_RS03180 0.64 -0.3 651,726 - sctW LU632_RS03180 0.64 -0.9 651,875 + sctW LU632_RS03180 0.76 -1.7 651,952 + sctW LU632_RS03180 0.83 +0.9 652,132 + -0.7 652,166 + +1.0 652,166 + -0.7 652,167 - +1.9 652,167 - +1.4 652,258 - -1.6 652,413 + +2.7 652,427 - +4.7 652,474 + +2.2 652,475 - +0.6 652,530 + LU632_RS03185 0.19 +2.3 652,531 - LU632_RS03185 0.19 -0.7 652,584 + LU632_RS03185 0.29 +6.1 652,606 - LU632_RS03185 0.33 -1.9 652,877 + LU632_RS03185 0.82 +3.1 652,877 + LU632_RS03185 0.82 -1.1 652,878 - LU632_RS03185 0.82 +1.7 652,965 + +2.4 652,966 - +4.2 653,207 + +3.3 653,237 + +2.5 653,237 + +1.9 653,271 - LU632_RS03190 0.10 +2.1 653,272 + LU632_RS03190 0.10 +0.4 653,273 - LU632_RS03190 0.10 -1.1 653,336 - LU632_RS03190 0.14 -0.5 653,336 - LU632_RS03190 0.14 -0.5 653,344 + LU632_RS03190 0.15 +3.3 653,345 - LU632_RS03190 0.15 +4.2 653,345 - LU632_RS03190 0.15 -0.0 653,345 - LU632_RS03190 0.15 +1.6 653,345 - LU632_RS03190 0.15 +1.6 653,345 - LU632_RS03190 0.15 +1.2 653,460 - LU632_RS03190 0.23 -1.9 653,474 + LU632_RS03190 0.24 -0.0 653,474 + LU632_RS03190 0.24 +0.9 653,475 - LU632_RS03190 0.24 +2.9 653,514 - LU632_RS03190 0.26 -0.3 653,514 - LU632_RS03190 0.26 +1.5 653,514 - LU632_RS03190 0.26 +0.6 653,578 + LU632_RS03190 0.31 +1.0 653,597 - LU632_RS03190 0.32 +2.4 653,605 + LU632_RS03190 0.32 +4.7 653,615 + LU632_RS03190 0.33 -0.0 653,675 - LU632_RS03190 0.37 +3.2 653,675 - LU632_RS03190 0.37 +0.7 653,717 - LU632_RS03190 0.40 +2.6 653,717 - LU632_RS03190 0.40 +1.3 653,857 + LU632_RS03190 0.49 +6.7 653,937 + LU632_RS03190 0.54 +2.1 653,937 + LU632_RS03190 0.54 +0.8 653,937 + LU632_RS03190 0.54 +1.0 653,937 + LU632_RS03190 0.54 -0.1 653,937 + LU632_RS03190 0.54 +0.7
Or see this region's nucleotide sequence