Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02820 and thiQ are separated by 232 nucleotides thiQ and thiP overlap by 17 nucleotides
LU632_RS02820: LU632_RS02820 - DedA family protein, at 573,647 to 574,414
_RS02820
LU632_RS02825: thiQ - thiamine ABC transporter ATP-binding protein ThiQ, at 574,647 to 575,348
thiQ
LU632_RS02830: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 575,332 to 576,942
thiP
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 573.647 kb on - strand at 573.647 kb on - strand at 573.670 kb on + strand at 573.670 kb on + strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.672 kb on + strand at 573.672 kb on + strand at 573.916 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 574.093 kb on - strand, within LU632_RS02820 at 574.160 kb on - strand, within LU632_RS02820 at 574.165 kb on + strand, within LU632_RS02820 at 574.172 kb on - strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.343 kb on - strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.412 kb on + strand at 574.489 kb on - strand at 574.493 kb on - strand at 574.494 kb on - strand at 574.649 kb on - strand at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.791 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.825 kb on - strand, within thiQ at 574.825 kb on - strand, within thiQ at 575.013 kb on - strand, within thiQ at 575.091 kb on + strand, within thiQ at 575.283 kb on + strand at 575.284 kb on - strand at 575.284 kb on - strand at 575.317 kb on + strand at 575.333 kb on + strand at 575.343 kb on + strand at 575.639 kb on + strand, within thiP at 575.657 kb on + strand, within thiP at 575.658 kb on - strand, within thiP at 575.716 kb on + strand, within thiP at 575.716 kb on + strand, within thiP at 575.717 kb on - strand, within thiP at 575.717 kb on - strand, within thiP at 575.947 kb on + strand, within thiP at 575.947 kb on + strand, within thiP at 575.977 kb on + strand, within thiP at 575.980 kb on + strand, within thiP at 575.981 kb on - strand, within thiP at 576.088 kb on + strand, within thiP
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 573,647 - -1.7 573,647 - -1.8 573,670 + +0.1 573,670 + -0.8 573,671 - -0.7 573,671 - +0.5 573,671 - +0.2 573,671 - +2.2 573,672 + +0.9 573,672 + +0.9 573,916 + LU632_RS02820 0.35 -0.1 573,975 + LU632_RS02820 0.43 -0.2 573,975 + LU632_RS02820 0.43 +0.7 573,975 + LU632_RS02820 0.43 -0.8 574,093 - LU632_RS02820 0.58 -0.6 574,160 - LU632_RS02820 0.67 +0.4 574,165 + LU632_RS02820 0.67 -2.1 574,172 - LU632_RS02820 0.68 -1.5 574,177 + LU632_RS02820 0.69 -0.6 574,177 + LU632_RS02820 0.69 -1.1 574,177 + LU632_RS02820 0.69 -1.9 574,178 - LU632_RS02820 0.69 +2.2 574,178 - LU632_RS02820 0.69 -0.4 574,178 - LU632_RS02820 0.69 +1.7 574,343 - -0.8 574,386 + -0.1 574,386 + -2.9 574,386 + -1.2 574,412 + +0.0 574,489 - +2.6 574,493 - +1.0 574,494 - -1.2 574,649 - -0.1 574,748 + thiQ LU632_RS02825 0.14 -1.2 574,748 + thiQ LU632_RS02825 0.14 -0.0 574,748 + thiQ LU632_RS02825 0.14 +0.4 574,791 + thiQ LU632_RS02825 0.21 -1.4 574,808 + thiQ LU632_RS02825 0.23 -1.3 574,808 + thiQ LU632_RS02825 0.23 -0.6 574,808 + thiQ LU632_RS02825 0.23 -1.5 574,809 - thiQ LU632_RS02825 0.23 -0.9 574,809 - thiQ LU632_RS02825 0.23 -0.9 574,824 + thiQ LU632_RS02825 0.25 +0.0 574,824 + thiQ LU632_RS02825 0.25 -1.2 574,825 - thiQ LU632_RS02825 0.25 -0.4 574,825 - thiQ LU632_RS02825 0.25 -2.5 575,013 - thiQ LU632_RS02825 0.52 -0.8 575,091 + thiQ LU632_RS02825 0.63 +0.9 575,283 + -0.6 575,284 - +1.9 575,284 - -0.8 575,317 + -1.1 575,333 + +1.4 575,343 + -1.1 575,639 + thiP LU632_RS02830 0.19 -0.3 575,657 + thiP LU632_RS02830 0.20 -0.4 575,658 - thiP LU632_RS02830 0.20 -1.7 575,716 + thiP LU632_RS02830 0.24 +1.7 575,716 + thiP LU632_RS02830 0.24 -0.7 575,717 - thiP LU632_RS02830 0.24 -1.5 575,717 - thiP LU632_RS02830 0.24 -1.3 575,947 + thiP LU632_RS02830 0.38 -1.3 575,947 + thiP LU632_RS02830 0.38 -0.7 575,977 + thiP LU632_RS02830 0.40 +4.0 575,980 + thiP LU632_RS02830 0.40 +0.8 575,981 - thiP LU632_RS02830 0.40 -0.1 576,088 + thiP LU632_RS02830 0.47 +0.8
Or see this region's nucleotide sequence