Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdxA and rsmA overlap by 1 nucleotides rsmA and apaG are separated by 1 nucleotides apaG and apaH are separated by 44 nucleotides
LU632_RS02725: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 548,981 to 549,964
pdxA
LU632_RS02730: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 549,964 to 550,794
rsmA
LU632_RS02735: apaG - Co2+/Mg2+ efflux protein ApaG, at 550,796 to 551,173
apaG
LU632_RS02740: apaH - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 551,218 to 552,048
apaH
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 549.829 kb on + strand, within pdxA at 549.934 kb on + strand at 549.962 kb on + strand at 550.033 kb on + strand at 550.034 kb on - strand at 550.036 kb on - strand at 550.144 kb on - strand, within rsmA at 550.261 kb on + strand, within rsmA at 550.309 kb on + strand, within rsmA at 550.310 kb on - strand, within rsmA at 550.311 kb on + strand, within rsmA at 550.349 kb on - strand, within rsmA at 550.351 kb on - strand, within rsmA at 550.459 kb on + strand, within rsmA at 550.538 kb on + strand, within rsmA at 550.629 kb on + strand, within rsmA at 550.835 kb on - strand, within apaG at 550.874 kb on + strand, within apaG at 550.888 kb on + strand, within apaG at 550.888 kb on + strand, within apaG at 550.929 kb on + strand, within apaG at 551.039 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.093 kb on - strand, within apaG at 551.093 kb on - strand, within apaG at 551.093 kb on - strand, within apaG at 551.093 kb on - strand, within apaG at 551.127 kb on + strand, within apaG at 551.172 kb on - strand at 552.050 kb on + strand at 552.065 kb on + strand at 552.065 kb on + strand at 552.065 kb on + strand at 552.065 kb on + strand at 552.066 kb on - strand at 552.088 kb on + strand at 552.088 kb on + strand at 552.088 kb on + strand at 552.088 kb on + strand at 552.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 549,829 + pdxA LU632_RS02725 0.86 -1.4 549,934 + -1.9 549,962 + -0.7 550,033 + -0.1 550,034 - +0.9 550,036 - -0.7 550,144 - rsmA LU632_RS02730 0.22 +3.5 550,261 + rsmA LU632_RS02730 0.36 +0.9 550,309 + rsmA LU632_RS02730 0.42 +2.3 550,310 - rsmA LU632_RS02730 0.42 +0.9 550,311 + rsmA LU632_RS02730 0.42 +2.0 550,349 - rsmA LU632_RS02730 0.46 -1.4 550,351 - rsmA LU632_RS02730 0.47 -0.1 550,459 + rsmA LU632_RS02730 0.60 -2.1 550,538 + rsmA LU632_RS02730 0.69 +0.9 550,629 + rsmA LU632_RS02730 0.80 -1.9 550,835 - apaG LU632_RS02735 0.10 -1.9 550,874 + apaG LU632_RS02735 0.21 +0.1 550,888 + apaG LU632_RS02735 0.24 +0.5 550,888 + apaG LU632_RS02735 0.24 +4.3 550,929 + apaG LU632_RS02735 0.35 +1.5 551,039 + apaG LU632_RS02735 0.64 +2.1 551,092 + apaG LU632_RS02735 0.78 +0.5 551,092 + apaG LU632_RS02735 0.78 -2.1 551,092 + apaG LU632_RS02735 0.78 +0.2 551,092 + apaG LU632_RS02735 0.78 +0.5 551,092 + apaG LU632_RS02735 0.78 +2.1 551,093 - apaG LU632_RS02735 0.79 +1.4 551,093 - apaG LU632_RS02735 0.79 +1.4 551,093 - apaG LU632_RS02735 0.79 +5.8 551,093 - apaG LU632_RS02735 0.79 +1.7 551,127 + apaG LU632_RS02735 0.88 +0.5 551,172 - +1.9 552,050 + -3.4 552,065 + -2.2 552,065 + -0.4 552,065 + +0.9 552,065 + -2.4 552,066 - +1.6 552,088 + +0.3 552,088 + -0.3 552,088 + +0.8 552,088 + +0.9 552,089 - -3.2
Or see this region's nucleotide sequence