Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ileS and lspA are separated by 0 nucleotides lspA and fkpB are separated by 9 nucleotides fkpB and ispH overlap by 20 nucleotides ispH and LU632_RS02700 are separated by 80 nucleotides LU632_RS02700 and LU632_RS02705 are separated by 60 nucleotides
LU632_RS02680: ileS - isoleucine--tRNA ligase, at 537,809 to 540,625
ileS
LU632_RS02685: lspA - signal peptidase II, at 540,626 to 541,120
lspA
LU632_RS02690: fkpB - FKBP-type peptidyl-prolyl cis-trans isomerase, at 541,130 to 541,600
fkpB
LU632_RS02695: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 541,581 to 542,534
ispH
LU632_RS02700: LU632_RS02700 - IS5 family transposase, at 542,615 to 543,440
_RS02700
LU632_RS02705: LU632_RS02705 - IS6 family transposase, at 543,501 to 543,963
_RS02705
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 541.118 kb on + strand at 541.143 kb on + strand at 541.363 kb on + strand, within fkpB at 542.546 kb on + strand at 542.552 kb on - strand at 542.620 kb on + strand at 543.471 kb on + strand at 543.471 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.501 kb on + strand at 543.501 kb on + strand at 543.503 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 541,118 + +3.9 541,143 + -0.2 541,363 + fkpB LU632_RS02690 0.49 -0.7 542,546 + -0.4 542,552 - -1.5 542,620 + -1.1 543,471 + -1.2 543,471 + -1.9 543,473 + -1.1 543,473 + -0.2 543,473 + -2.2 543,501 + +3.9 543,501 + -0.3 543,503 + +0.6
Or see this region's nucleotide sequence