Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02255 and LU632_RS02260 are separated by 83 nucleotides LU632_RS02260 and LU632_RS02265 are separated by 123 nucleotides LU632_RS02265 and LU632_RS02270 are separated by 812 nucleotides
LU632_RS02255: LU632_RS02255 - UPF0149 family protein, at 446,109 to 446,684
_RS02255
LU632_RS02260: LU632_RS02260 - pirin family protein, at 446,768 to 447,472
_RS02260
LU632_RS02265: LU632_RS02265 - LysR family transcriptional regulator, at 447,596 to 448,498
_RS02265
LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604
_RS02270
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 446.712 kb on + strand at 446.712 kb on - strand at 446.740 kb on - strand at 446.799 kb on - strand at 446.842 kb on + strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.925 kb on + strand, within LU632_RS02260 at 446.926 kb on - strand, within LU632_RS02260 at 446.950 kb on + strand, within LU632_RS02260 at 446.972 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.122 kb on + strand, within LU632_RS02260 at 447.176 kb on + strand, within LU632_RS02260 at 447.297 kb on + strand, within LU632_RS02260 at 447.343 kb on + strand, within LU632_RS02260 at 447.363 kb on + strand, within LU632_RS02260 at 447.387 kb on + strand, within LU632_RS02260 at 447.506 kb on + strand at 447.507 kb on - strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.554 kb on + strand at 447.714 kb on - strand, within LU632_RS02265 at 447.714 kb on - strand, within LU632_RS02265 at 447.715 kb on + strand, within LU632_RS02265 at 447.785 kb on - strand, within LU632_RS02265 at 447.975 kb on + strand, within LU632_RS02265 at 448.102 kb on + strand, within LU632_RS02265 at 448.116 kb on - strand, within LU632_RS02265 at 448.180 kb on - strand, within LU632_RS02265 at 448.325 kb on - strand, within LU632_RS02265 at 448.388 kb on + strand, within LU632_RS02265 at 448.389 kb on - strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.409 kb on - strand at 448.409 kb on - strand at 448.411 kb on + strand at 448.412 kb on - strand at 448.477 kb on - strand at 448.500 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.529 kb on - strand at 448.584 kb on + strand at 448.591 kb on - strand at 448.622 kb on + strand at 448.623 kb on - strand at 448.640 kb on - strand at 448.664 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.728 kb on - strand at 448.849 kb on - strand at 448.850 kb on + strand at 448.876 kb on - strand at 448.899 kb on - strand at 448.994 kb on + strand at 449.280 kb on - strand at 449.341 kb on - strand, within LU632_RS02270 at 449.408 kb on + strand, within LU632_RS02270
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 446,712 + +0.0 446,712 - -0.5 446,740 - +0.1 446,799 - +4.2 446,842 + LU632_RS02260 0.10 -0.9 446,864 - LU632_RS02260 0.14 +0.9 446,864 - LU632_RS02260 0.14 +1.3 446,864 - LU632_RS02260 0.14 +0.9 446,891 + LU632_RS02260 0.17 -0.1 446,891 + LU632_RS02260 0.17 -0.3 446,922 - LU632_RS02260 0.22 +1.9 446,922 - LU632_RS02260 0.22 +0.5 446,925 + LU632_RS02260 0.22 +2.0 446,926 - LU632_RS02260 0.22 -1.3 446,950 + LU632_RS02260 0.26 +1.2 446,972 + LU632_RS02260 0.29 +0.9 447,011 + LU632_RS02260 0.34 +0.5 447,011 + LU632_RS02260 0.34 +0.3 447,011 + LU632_RS02260 0.34 +1.0 447,122 + LU632_RS02260 0.50 -0.7 447,176 + LU632_RS02260 0.58 +0.1 447,297 + LU632_RS02260 0.75 -0.5 447,343 + LU632_RS02260 0.82 -1.4 447,363 + LU632_RS02260 0.84 -1.4 447,387 + LU632_RS02260 0.88 -0.1 447,506 + +1.1 447,507 - +0.2 447,511 + +0.9 447,511 + +0.6 447,512 - +0.0 447,512 - -0.7 447,512 - -1.9 447,554 + -0.7 447,714 - LU632_RS02265 0.13 -0.9 447,714 - LU632_RS02265 0.13 -0.1 447,715 + LU632_RS02265 0.13 +1.9 447,785 - LU632_RS02265 0.21 -0.2 447,975 + LU632_RS02265 0.42 +0.9 448,102 + LU632_RS02265 0.56 +0.9 448,116 - LU632_RS02265 0.58 +0.1 448,180 - LU632_RS02265 0.65 +2.5 448,325 - LU632_RS02265 0.81 +1.5 448,388 + LU632_RS02265 0.88 -0.1 448,389 - LU632_RS02265 0.88 +0.6 448,390 + LU632_RS02265 0.88 -0.4 448,390 + LU632_RS02265 0.88 -0.1 448,390 + LU632_RS02265 0.88 -0.3 448,390 + LU632_RS02265 0.88 +0.7 448,390 + LU632_RS02265 0.88 +1.4 448,396 + LU632_RS02265 0.89 +0.6 448,396 + LU632_RS02265 0.89 +2.7 448,397 - LU632_RS02265 0.89 +0.5 448,397 - LU632_RS02265 0.89 +0.7 448,401 + LU632_RS02265 0.89 -1.1 448,401 + LU632_RS02265 0.89 +1.1 448,402 - LU632_RS02265 0.89 +0.6 448,402 - LU632_RS02265 0.89 +2.5 448,408 + +0.7 448,408 + -0.7 448,408 + +4.5 448,408 + -0.8 448,408 + -0.1 448,409 - +0.9 448,409 - +0.1 448,411 + +1.0 448,412 - +2.6 448,477 - -1.1 448,500 + +0.4 448,528 + +0.7 448,528 + -0.7 448,528 + -0.1 448,529 - -1.1 448,584 + -0.1 448,591 - +1.7 448,622 + +1.0 448,623 - -0.8 448,640 - +0.8 448,664 - -0.1 448,698 - +1.4 448,698 - +0.4 448,698 - -0.2 448,728 - +0.4 448,849 - -0.5 448,850 + +0.2 448,876 - -0.3 448,899 - -0.1 448,994 + -0.3 449,280 - +0.1 449,341 - LU632_RS02270 0.10 -1.4 449,408 + LU632_RS02270 0.33 +0.2
Or see this region's nucleotide sequence