Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02225 and rsmI are separated by 62 nucleotides
LU632_RS02225: LU632_RS02225 - penicillin-binding protein activator, at 438,840 to 440,888
_RS02225
LU632_RS02230: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 440,951 to 441,808
rsmI
Position (kb) 440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.947 kb on - strand at 440.947 kb on - strand at 440.947 kb on - strand at 440.987 kb on + strand at 440.987 kb on + strand at 440.987 kb on + strand at 440.988 kb on - strand at 441.079 kb on + strand, within rsmI at 441.079 kb on + strand, within rsmI at 441.080 kb on - strand, within rsmI at 441.089 kb on - strand, within rsmI at 441.089 kb on - strand, within rsmI at 441.102 kb on + strand, within rsmI at 441.103 kb on - strand, within rsmI at 441.138 kb on + strand, within rsmI at 441.139 kb on - strand, within rsmI at 441.203 kb on - strand, within rsmI at 441.203 kb on - strand, within rsmI at 441.203 kb on - strand, within rsmI at 441.234 kb on + strand, within rsmI at 441.320 kb on - strand, within rsmI at 441.320 kb on - strand, within rsmI at 441.321 kb on + strand, within rsmI at 441.386 kb on - strand, within rsmI at 441.386 kb on - strand, within rsmI at 441.450 kb on - strand, within rsmI at 441.457 kb on + strand, within rsmI at 441.458 kb on - strand, within rsmI at 441.515 kb on + strand, within rsmI at 441.516 kb on - strand, within rsmI at 441.778 kb on + strand at 441.783 kb on - strand at 441.783 kb on - strand at 442.226 kb on - strand at 442.226 kb on - strand at 442.226 kb on - strand at 442.261 kb on - strand at 442.281 kb on - strand at 442.317 kb on - strand at 442.333 kb on + strand at 442.391 kb on + strand at 442.392 kb on - strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.445 kb on - strand at 442.448 kb on + strand at 442.448 kb on + strand at 442.458 kb on - strand at 442.553 kb on + strand at 442.676 kb on - strand at 442.676 kb on - strand at 442.758 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 440,947 - -0.2 440,947 - -1.4 440,947 - +0.5 440,987 + -0.1 440,987 + -1.1 440,987 + -1.8 440,988 - -0.1 441,079 + rsmI LU632_RS02230 0.15 -0.1 441,079 + rsmI LU632_RS02230 0.15 -1.1 441,080 - rsmI LU632_RS02230 0.15 -2.3 441,089 - rsmI LU632_RS02230 0.16 -0.1 441,089 - rsmI LU632_RS02230 0.16 +1.9 441,102 + rsmI LU632_RS02230 0.18 +0.3 441,103 - rsmI LU632_RS02230 0.18 -1.9 441,138 + rsmI LU632_RS02230 0.22 -1.1 441,139 - rsmI LU632_RS02230 0.22 -1.4 441,203 - rsmI LU632_RS02230 0.29 -1.1 441,203 - rsmI LU632_RS02230 0.29 +0.9 441,203 - rsmI LU632_RS02230 0.29 -0.1 441,234 + rsmI LU632_RS02230 0.33 -2.3 441,320 - rsmI LU632_RS02230 0.43 -0.7 441,320 - rsmI LU632_RS02230 0.43 -0.7 441,321 + rsmI LU632_RS02230 0.43 -0.1 441,386 - rsmI LU632_RS02230 0.51 -2.4 441,386 - rsmI LU632_RS02230 0.51 -0.7 441,450 - rsmI LU632_RS02230 0.58 -0.1 441,457 + rsmI LU632_RS02230 0.59 -0.1 441,458 - rsmI LU632_RS02230 0.59 +0.5 441,515 + rsmI LU632_RS02230 0.66 +0.1 441,516 - rsmI LU632_RS02230 0.66 -0.1 441,778 + +1.2 441,783 - -2.1 441,783 - -1.7 442,226 - +0.0 442,226 - -0.7 442,226 - -1.4 442,261 - +1.8 442,281 - +0.9 442,317 - -1.1 442,333 + +0.7 442,391 + +0.5 442,392 - +0.6 442,444 + -2.6 442,444 + +0.5 442,444 + -0.3 442,444 + -0.8 442,445 - +0.3 442,448 + -0.1 442,448 + -1.4 442,458 - +0.6 442,553 + -0.5 442,676 - -0.3 442,676 - -2.3 442,758 + -0.4 442,785 + -0.9 442,785 + -1.0 442,785 + +1.0 442,785 + +0.3 442,786 - -1.9 442,786 - -3.0 442,786 - -0.9 442,786 - +0.5 442,786 - -0.1
Or see this region's nucleotide sequence