Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02185 and LU632_RS02190 overlap by 17 nucleotides LU632_RS02190 and LU632_RS02195 overlap by 4 nucleotides LU632_RS02195 and LU632_RS02200 are separated by 64 nucleotides
LU632_RS02185: LU632_RS02185 - amidohydrolase/deacetylase family metallohydrolase, at 430,951 to 432,087
_RS02185
LU632_RS02190: LU632_RS02190 - DgaE family pyridoxal phosphate-dependent ammonia lyase, at 432,071 to 433,192
_RS02190
LU632_RS02195: LU632_RS02195 - KDGP aldolase family protein, at 433,189 to 433,929
_RS02195
LU632_RS02200: LU632_RS02200 - lactonase family protein, at 433,994 to 435,139
_RS02200
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 431.146 kb on + strand, within LU632_RS02185 at 431.146 kb on + strand, within LU632_RS02185 at 431.147 kb on - strand, within LU632_RS02185 at 431.148 kb on - strand, within LU632_RS02185 at 431.272 kb on + strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.386 kb on - strand, within LU632_RS02185 at 431.534 kb on + strand, within LU632_RS02185 at 431.534 kb on + strand, within LU632_RS02185 at 431.575 kb on + strand, within LU632_RS02185 at 431.576 kb on - strand, within LU632_RS02185 at 431.576 kb on - strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.914 kb on + strand, within LU632_RS02185 at 432.084 kb on - strand at 432.092 kb on + strand at 432.093 kb on - strand at 432.100 kb on - strand at 432.182 kb on + strand at 432.198 kb on - strand, within LU632_RS02190 at 432.236 kb on + strand, within LU632_RS02190 at 432.236 kb on + strand, within LU632_RS02190 at 432.237 kb on - strand, within LU632_RS02190 at 432.411 kb on + strand, within LU632_RS02190 at 432.665 kb on + strand, within LU632_RS02190 at 432.666 kb on - strand, within LU632_RS02190 at 432.666 kb on - strand, within LU632_RS02190 at 432.695 kb on + strand, within LU632_RS02190 at 433.067 kb on + strand, within LU632_RS02190 at 433.079 kb on + strand, within LU632_RS02190 at 433.145 kb on - strand at 433.249 kb on - strand at 433.357 kb on + strand, within LU632_RS02195 at 433.358 kb on - strand, within LU632_RS02195 at 433.358 kb on - strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.837 kb on - strand, within LU632_RS02195 at 433.841 kb on - strand, within LU632_RS02195 at 433.841 kb on - strand, within LU632_RS02195 at 433.977 kb on + strand at 433.977 kb on + strand at 433.977 kb on + strand at 433.978 kb on - strand at 433.978 kb on - strand at 433.979 kb on + strand at 433.980 kb on - strand at 433.980 kb on - strand at 433.980 kb on - strand at 433.999 kb on + strand at 434.069 kb on + strand at 434.070 kb on - strand at 434.075 kb on + strand at 434.076 kb on - strand at 434.076 kb on - strand at 434.087 kb on + strand at 434.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 431,146 + LU632_RS02185 0.17 -0.3 431,146 + LU632_RS02185 0.17 -0.7 431,147 - LU632_RS02185 0.17 -0.1 431,148 - LU632_RS02185 0.17 -0.6 431,272 + LU632_RS02185 0.28 +0.6 431,273 - LU632_RS02185 0.28 -3.1 431,273 - LU632_RS02185 0.28 -1.1 431,273 - LU632_RS02185 0.28 -1.1 431,386 - LU632_RS02185 0.38 -0.1 431,534 + LU632_RS02185 0.51 -0.6 431,534 + LU632_RS02185 0.51 +0.4 431,575 + LU632_RS02185 0.55 +0.9 431,576 - LU632_RS02185 0.55 +0.3 431,576 - LU632_RS02185 0.55 +1.3 431,755 + LU632_RS02185 0.71 +0.3 431,755 + LU632_RS02185 0.71 +1.5 431,755 + LU632_RS02185 0.71 -1.2 431,914 + LU632_RS02185 0.85 -0.7 432,084 - +0.2 432,092 + -0.1 432,093 - +2.3 432,100 - +1.1 432,182 + -0.6 432,198 - LU632_RS02190 0.11 -0.3 432,236 + LU632_RS02190 0.15 +1.9 432,236 + LU632_RS02190 0.15 -0.4 432,237 - LU632_RS02190 0.15 +3.5 432,411 + LU632_RS02190 0.30 +0.6 432,665 + LU632_RS02190 0.53 +6.2 432,666 - LU632_RS02190 0.53 -1.1 432,666 - LU632_RS02190 0.53 -0.1 432,695 + LU632_RS02190 0.56 +1.3 433,067 + LU632_RS02190 0.89 -1.9 433,079 + LU632_RS02190 0.90 +1.1 433,145 - -0.1 433,249 - +0.3 433,357 + LU632_RS02195 0.23 -0.7 433,358 - LU632_RS02195 0.23 +0.4 433,358 - LU632_RS02195 0.23 +0.2 433,780 + LU632_RS02195 0.80 -1.8 433,780 + LU632_RS02195 0.80 +0.5 433,780 + LU632_RS02195 0.80 +1.0 433,781 - LU632_RS02195 0.80 -1.1 433,781 - LU632_RS02195 0.80 -0.3 433,781 - LU632_RS02195 0.80 -1.7 433,781 - LU632_RS02195 0.80 +0.3 433,837 - LU632_RS02195 0.87 +0.2 433,841 - LU632_RS02195 0.88 -0.7 433,841 - LU632_RS02195 0.88 -0.2 433,977 + +3.0 433,977 + +2.5 433,977 + -2.0 433,978 - -1.8 433,978 - +3.6 433,979 + +1.5 433,980 - +0.4 433,980 - -0.2 433,980 - +0.9 433,999 + -0.8 434,069 + +1.5 434,070 - -1.4 434,075 + +0.9 434,076 - +0.2 434,076 - +0.9 434,087 + +0.1 434,088 - -0.8
Or see this region's nucleotide sequence