Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02100

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS02090 and LU632_RS02095 are separated by 303 nucleotidesLU632_RS02095 and LU632_RS02100 are separated by 121 nucleotidesLU632_RS02100 and LU632_RS02105 are separated by 519 nucleotides LU632_RS02090: LU632_RS02090 - YtfJ family protein, at 410,660 to 411,242 _RS02090 LU632_RS02095: LU632_RS02095 - DUF1107 domain-containing protein, at 411,546 to 411,752 _RS02095 LU632_RS02100: LU632_RS02100 - hemolysin family protein, at 411,874 to 413,205 _RS02100 LU632_RS02105: LU632_RS02105 - autotransporter assembly complex protein TamA, at 413,725 to 415,449 _RS02105 Position (kb) 411 412 413 414Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 410.897 kb on - strand, within LU632_RS02090at 411.002 kb on + strand, within LU632_RS02090at 411.043 kb on + strand, within LU632_RS02090at 411.124 kb on - strand, within LU632_RS02090at 411.168 kb on + strand, within LU632_RS02090at 411.171 kb on - strand, within LU632_RS02090at 411.263 kb on + strandat 411.330 kb on - strandat 411.330 kb on - strandat 411.339 kb on + strandat 411.370 kb on + strandat 411.382 kb on + strandat 411.383 kb on - strandat 411.468 kb on + strandat 411.468 kb on + strandat 411.584 kb on + strand, within LU632_RS02095at 411.631 kb on + strand, within LU632_RS02095at 411.632 kb on - strand, within LU632_RS02095at 411.693 kb on + strand, within LU632_RS02095at 411.694 kb on - strand, within LU632_RS02095at 411.776 kb on - strandat 411.805 kb on + strandat 411.805 kb on + strandat 411.818 kb on - strandat 411.846 kb on - strandat 411.848 kb on + strandat 411.849 kb on - strandat 411.872 kb on - strandat 411.872 kb on - strandat 411.904 kb on - strandat 411.962 kb on + strandat 411.963 kb on - strandat 411.980 kb on - strandat 412.033 kb on - strand, within LU632_RS02100at 412.033 kb on - strand, within LU632_RS02100at 412.036 kb on + strand, within LU632_RS02100at 412.036 kb on + strand, within LU632_RS02100at 412.041 kb on + strand, within LU632_RS02100at 412.042 kb on - strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.070 kb on + strand, within LU632_RS02100at 412.070 kb on + strand, within LU632_RS02100at 412.070 kb on + strand, within LU632_RS02100at 412.115 kb on - strand, within LU632_RS02100at 412.241 kb on - strand, within LU632_RS02100at 412.371 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.384 kb on - strand, within LU632_RS02100at 412.412 kb on - strand, within LU632_RS02100at 412.419 kb on + strand, within LU632_RS02100at 412.430 kb on + strand, within LU632_RS02100at 412.440 kb on + strand, within LU632_RS02100at 412.441 kb on - strand, within LU632_RS02100at 412.441 kb on - strand, within LU632_RS02100at 412.458 kb on + strand, within LU632_RS02100at 412.664 kb on + strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.680 kb on + strand, within LU632_RS02100at 412.680 kb on + strand, within LU632_RS02100at 412.680 kb on + strand, within LU632_RS02100at 412.681 kb on - strand, within LU632_RS02100at 412.681 kb on - strand, within LU632_RS02100at 412.684 kb on - strand, within LU632_RS02100at 412.684 kb on - strand, within LU632_RS02100at 412.725 kb on + strand, within LU632_RS02100at 412.899 kb on + strand, within LU632_RS02100at 412.900 kb on - strand, within LU632_RS02100at 413.061 kb on + strand, within LU632_RS02100at 413.082 kb on + strandat 413.083 kb on - strandat 413.083 kb on - strandat 413.166 kb on + strandat 413.197 kb on - strandat 413.197 kb on - strandat 413.201 kb on - strandat 413.205 kb on + strandat 413.216 kb on + strandat 413.216 kb on + strandat 413.246 kb on - strandat 413.398 kb on + strandat 413.399 kb on - strandat 413.406 kb on + strandat 413.428 kb on + strandat 413.434 kb on + strandat 413.435 kb on - strandat 413.473 kb on + strandat 413.477 kb on + strandat 413.477 kb on + strandat 413.486 kb on + strandat 413.487 kb on - strandat 413.494 kb on + strandat 413.497 kb on - strandat 413.545 kb on - strandat 413.569 kb on + strandat 413.570 kb on - strandat 413.570 kb on - strandat 413.642 kb on + strandat 413.697 kb on + strandat 413.720 kb on - strandat 413.732 kb on - strandat 413.904 kb on - strand, within LU632_RS02105at 413.904 kb on - strand, within LU632_RS02105at 413.932 kb on + strand, within LU632_RS02105at 414.006 kb on - strand, within LU632_RS02105at 414.021 kb on + strand, within LU632_RS02105at 414.080 kb on - strand, within LU632_RS02105at 414.123 kb on - strand, within LU632_RS02105at 414.140 kb on - strand, within LU632_RS02105at 414.150 kb on + strand, within LU632_RS02105at 414.168 kb on + strand, within LU632_RS02105at 414.202 kb on + strand, within LU632_RS02105at 414.203 kb on - strand, within LU632_RS02105

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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410,897 - LU632_RS02090 0.41 +0.1
411,002 + LU632_RS02090 0.59 +0.9
411,043 + LU632_RS02090 0.66 +0.1
411,124 - LU632_RS02090 0.80 +2.3
411,168 + LU632_RS02090 0.87 -0.2
411,171 - LU632_RS02090 0.88 -1.0
411,263 + +0.9
411,330 - -0.3
411,330 - -1.0
411,339 + +2.9
411,370 + +0.7
411,382 + -1.7
411,383 - +2.0
411,468 + +1.6
411,468 + -1.1
411,584 + LU632_RS02095 0.18 +3.0
411,631 + LU632_RS02095 0.41 -0.7
411,632 - LU632_RS02095 0.42 +0.0
411,693 + LU632_RS02095 0.71 -0.1
411,694 - LU632_RS02095 0.71 +2.5
411,776 - -1.1
411,805 + -1.7
411,805 + -0.7
411,818 - -0.5
411,846 - -2.1
411,848 + -0.2
411,849 - -1.7
411,872 - -1.4
411,872 - +0.4
411,904 - +0.4
411,962 + -2.9
411,963 - -2.8
411,980 - -0.7
412,033 - LU632_RS02100 0.12 -2.6
412,033 - LU632_RS02100 0.12 +0.9
412,036 + LU632_RS02100 0.12 -2.5
412,036 + LU632_RS02100 0.12 -4.1
412,041 + LU632_RS02100 0.13 -3.3
412,042 - LU632_RS02100 0.13 -0.7
412,043 + LU632_RS02100 0.13 -2.0
412,043 + LU632_RS02100 0.13 -4.5
412,043 + LU632_RS02100 0.13 -2.4
412,043 + LU632_RS02100 0.13 -2.0
412,043 + LU632_RS02100 0.13 -2.7
412,043 + LU632_RS02100 0.13 -5.7
412,043 + LU632_RS02100 0.13 -5.0
412,043 + LU632_RS02100 0.13 -3.0
412,043 + LU632_RS02100 0.13 -0.7
412,043 + LU632_RS02100 0.13 -1.9
412,043 + LU632_RS02100 0.13 -3.5
412,043 + LU632_RS02100 0.13 -2.4
412,043 + LU632_RS02100 0.13 -1.1
412,044 - LU632_RS02100 0.13 -4.8
412,044 - LU632_RS02100 0.13 -2.1
412,044 - LU632_RS02100 0.13 -1.9
412,044 - LU632_RS02100 0.13 -2.8
412,044 - LU632_RS02100 0.13 -3.4
412,070 + LU632_RS02100 0.15 -2.5
412,070 + LU632_RS02100 0.15 -1.5
412,070 + LU632_RS02100 0.15 -2.8
412,115 - LU632_RS02100 0.18 -3.2
412,241 - LU632_RS02100 0.28 -1.1
412,371 + LU632_RS02100 0.37 -3.6
412,375 + LU632_RS02100 0.38 -1.7
412,375 + LU632_RS02100 0.38 -0.7
412,375 + LU632_RS02100 0.38 -2.8
412,375 + LU632_RS02100 0.38 -2.5
412,384 - LU632_RS02100 0.38 -4.3
412,412 - LU632_RS02100 0.40 -0.1
412,419 + LU632_RS02100 0.41 +0.9
412,430 + LU632_RS02100 0.42 -2.7
412,440 + LU632_RS02100 0.42 -1.9
412,441 - LU632_RS02100 0.43 -1.7
412,441 - LU632_RS02100 0.43 -3.5
412,458 + LU632_RS02100 0.44 +0.9
412,664 + LU632_RS02100 0.59 -3.2
412,665 - LU632_RS02100 0.59 +0.9
412,665 - LU632_RS02100 0.59 -1.4
412,665 - LU632_RS02100 0.59 -1.1
412,665 - LU632_RS02100 0.59 -4.0
412,680 + LU632_RS02100 0.61 -0.7
412,680 + LU632_RS02100 0.61 -2.1
412,680 + LU632_RS02100 0.61 -4.0
412,681 - LU632_RS02100 0.61 -3.4
412,681 - LU632_RS02100 0.61 -3.3
412,684 - LU632_RS02100 0.61 -0.9
412,684 - LU632_RS02100 0.61 -3.1
412,725 + LU632_RS02100 0.64 -3.4
412,899 + LU632_RS02100 0.77 -3.8
412,900 - LU632_RS02100 0.77 -3.8
413,061 + LU632_RS02100 0.89 -2.9
413,082 + -2.2
413,083 - -3.7
413,083 - -3.5
413,166 + -1.7
413,197 - -1.1
413,197 - -4.2
413,201 - -0.7
413,205 + -2.1
413,216 + -3.3
413,216 + -1.4
413,246 - +1.6
413,398 + -3.0
413,399 - -0.6
413,406 + -5.8
413,428 + +0.9
413,434 + -2.5
413,435 - -0.7
413,473 + +0.9
413,477 + +0.7
413,477 + +0.4
413,486 + -1.1
413,487 - +2.9
413,494 + -2.5
413,497 - +0.9
413,545 - -0.4
413,569 + -2.3
413,570 - -1.9
413,570 - +1.7
413,642 + -0.4
413,697 + +1.1
413,720 - -1.1
413,732 - -0.3
413,904 - LU632_RS02105 0.10 +0.5
413,904 - LU632_RS02105 0.10 -0.5
413,932 + LU632_RS02105 0.12 +0.9
414,006 - LU632_RS02105 0.16 -2.6
414,021 + LU632_RS02105 0.17 -0.1
414,080 - LU632_RS02105 0.21 -0.7
414,123 - LU632_RS02105 0.23 -2.8
414,140 - LU632_RS02105 0.24 -2.2
414,150 + LU632_RS02105 0.25 -0.1
414,168 + LU632_RS02105 0.26 +2.2
414,202 + LU632_RS02105 0.28 -0.1
414,203 - LU632_RS02105 0.28 -3.4

Or see this region's nucleotide sequence