Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01825 and LU632_RS01830 overlap by 7 nucleotides LU632_RS01830 and LU632_RS01835 are separated by 171 nucleotides LU632_RS01835 and LU632_RS01840 are separated by 178 nucleotides
LU632_RS01825: LU632_RS01825 - IS5 family transposase, at 351,201 to 351,986
_RS01825
LU632_RS01830: LU632_RS01830 - IS1 family transposase, at 351,980 to 352,677
_RS01830
LU632_RS01835: LU632_RS01835 - transposase, at 352,849 to 353,495
_RS01835
LU632_RS01840: LU632_RS01840 - protein-disulfide reductase DsbD, at 353,674 to 355,362
_RS01840
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 350.994 kb on + strand at 351.126 kb on + strand at 351.128 kb on + strand at 351.128 kb on + strand at 351.128 kb on + strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.168 kb on - strand at 351.168 kb on - strand at 351.168 kb on - strand at 351.802 kb on - strand, within LU632_RS01825 at 351.802 kb on - strand, within LU632_RS01825 at 352.702 kb on + strand at 352.747 kb on + strand at 352.748 kb on - strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.776 kb on - strand at 352.778 kb on - strand at 352.778 kb on - strand at 352.788 kb on + strand at 353.585 kb on - strand at 353.593 kb on + strand at 353.593 kb on + strand at 353.601 kb on + strand at 353.601 kb on + strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.605 kb on + strand at 353.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 350,994 + +0.0 351,126 + -1.2 351,128 + +0.3 351,128 + +0.4 351,128 + +1.9 351,129 - -0.7 351,129 - +1.3 351,129 - -0.3 351,129 - +0.4 351,129 - -1.4 351,168 - +1.9 351,168 - -0.6 351,168 - +0.5 351,802 - LU632_RS01825 0.76 -0.5 351,802 - LU632_RS01825 0.76 +1.9 352,702 + -2.4 352,747 + +2.5 352,748 - +1.5 352,775 + -0.7 352,775 + +1.5 352,775 + -0.9 352,776 - -0.5 352,778 - +2.9 352,778 - -0.7 352,788 + -0.9 353,585 - -0.6 353,593 + +1.9 353,593 + -0.6 353,601 + -2.1 353,601 + +0.4 353,602 - -0.6 353,602 - -0.8 353,602 - +0.1 353,602 - -0.6 353,602 - -0.1 353,602 - -0.7 353,605 + -0.2 353,676 - +2.0
Or see this region's nucleotide sequence