Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01780 and LU632_RS01785 are separated by 174 nucleotides LU632_RS01785 and LU632_RS01790 are separated by 159 nucleotides LU632_RS01790 and LU632_RS01795 are separated by 167 nucleotides LU632_RS01795 and LU632_RS01800 are separated by 25 nucleotides
LU632_RS01780: LU632_RS01780 - conjugal transfer protein TraE, at 345,029 to 345,997
_RS01780
LU632_RS01785: LU632_RS01785 - hypothetical protein, at 346,172 to 346,729
_RS01785
LU632_RS01790: LU632_RS01790 - hypothetical protein, at 346,889 to 347,059
_RS01790
LU632_RS01795: LU632_RS01795 - TraI domain-containing protein, at 347,227 to 347,688
_RS01795
LU632_RS01800: LU632_RS01800 - DNA-binding domain-containing protein, at 347,714 to 348,442
_RS01800
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.998 kb on - strand at 345.998 kb on - strand at 345.998 kb on - strand at 346.068 kb on + strand at 346.089 kb on + strand at 346.090 kb on - strand at 346.091 kb on + strand at 346.121 kb on + strand at 346.729 kb on + strand at 346.729 kb on + strand at 346.818 kb on - strand at 346.818 kb on - strand at 346.832 kb on + strand at 346.833 kb on - strand at 346.887 kb on + strand at 346.888 kb on - strand at 347.019 kb on + strand, within LU632_RS01790 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.448 kb on + strand, within LU632_RS01795 at 347.723 kb on - strand at 347.725 kb on + strand at 347.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 345,998 - +0.5 345,998 - -0.1 345,998 - +0.2 346,068 + +0.3 346,089 + -1.4 346,090 - -0.7 346,091 + +0.9 346,121 + +0.1 346,729 + +2.4 346,729 + -1.1 346,818 - +1.3 346,818 - -0.0 346,832 + -2.0 346,833 - +0.1 346,887 + +0.3 346,888 - -1.0 347,019 + LU632_RS01790 0.76 +1.7 347,446 + LU632_RS01795 0.47 -0.4 347,446 + LU632_RS01795 0.47 +1.8 347,446 + LU632_RS01795 0.47 -1.5 347,446 + LU632_RS01795 0.47 +0.9 347,446 + LU632_RS01795 0.47 +0.6 347,447 - LU632_RS01795 0.48 +2.5 347,447 - LU632_RS01795 0.48 -0.7 347,447 - LU632_RS01795 0.48 -0.1 347,447 - LU632_RS01795 0.48 +0.1 347,447 - LU632_RS01795 0.48 -0.8 347,447 - LU632_RS01795 0.48 -0.6 347,447 - LU632_RS01795 0.48 -0.4 347,448 + LU632_RS01795 0.48 -1.0 347,723 - +0.1 347,725 + +1.2 347,733 + +0.7
Or see this region's nucleotide sequence