Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01635 and LU632_RS01640 overlap by 4 nucleotides LU632_RS01640 and LU632_RS01645 overlap by 4 nucleotides LU632_RS01645 and LU632_RS01650 overlap by 14 nucleotides LU632_RS01650 and LU632_RS01655 overlap by 8 nucleotides LU632_RS01655 and LU632_RS01660 overlap by 11 nucleotides
LU632_RS01635: LU632_RS01635 - phage virion morphogenesis protein, at 324,191 to 324,829
_RS01635
LU632_RS01640: LU632_RS01640 - phage baseplate assembly protein V, at 324,826 to 325,401
_RS01640
LU632_RS01645: LU632_RS01645 - GPW/gp25 family protein, at 325,398 to 325,766
_RS01645
LU632_RS01650: LU632_RS01650 - baseplate J/gp47 family protein, at 325,753 to 326,649
_RS01650
LU632_RS01655: LU632_RS01655 - phage tail protein I, at 326,642 to 327,256
_RS01655
LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247
_RS01660
Position (kb) 325
326
327 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 325.023 kb on + strand, within LU632_RS01640 at 325.067 kb on - strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.194 kb on + strand, within LU632_RS01640 at 325.195 kb on - strand, within LU632_RS01640 at 325.413 kb on - strand at 325.586 kb on + strand, within LU632_RS01645 at 325.587 kb on - strand, within LU632_RS01645 at 325.650 kb on - strand, within LU632_RS01645 at 325.650 kb on - strand, within LU632_RS01645 at 325.652 kb on + strand, within LU632_RS01645 at 325.652 kb on + strand, within LU632_RS01645 at 325.652 kb on + strand, within LU632_RS01645 at 325.653 kb on - strand, within LU632_RS01645 at 325.653 kb on - strand, within LU632_RS01645 at 325.795 kb on - strand at 325.922 kb on + strand, within LU632_RS01650 at 325.923 kb on - strand, within LU632_RS01650 at 326.176 kb on + strand, within LU632_RS01650 at 326.176 kb on + strand, within LU632_RS01650 at 326.177 kb on - strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.247 kb on - strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.361 kb on - strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.386 kb on - strand, within LU632_RS01650 at 326.386 kb on - strand, within LU632_RS01650 at 326.404 kb on + strand, within LU632_RS01650 at 326.404 kb on + strand, within LU632_RS01650 at 326.405 kb on - strand, within LU632_RS01650 at 326.405 kb on - strand, within LU632_RS01650 at 326.648 kb on - strand at 326.648 kb on - strand at 326.749 kb on + strand, within LU632_RS01655 at 327.179 kb on - strand, within LU632_RS01655 at 327.179 kb on - strand, within LU632_RS01655 at 327.201 kb on - strand at 327.201 kb on - strand at 327.202 kb on + strand at 327.255 kb on - strand at 327.255 kb on - strand at 327.259 kb on - strand at 327.453 kb on - strand, within LU632_RS01660 at 327.464 kb on + strand, within LU632_RS01660 at 327.573 kb on + strand, within LU632_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 325,023 + LU632_RS01640 0.34 -0.1 325,067 - LU632_RS01640 0.42 -1.2 325,194 + LU632_RS01640 0.64 +0.4 325,194 + LU632_RS01640 0.64 +1.0 325,194 + LU632_RS01640 0.64 -0.7 325,194 + LU632_RS01640 0.64 -2.6 325,195 - LU632_RS01640 0.64 +1.6 325,413 - +1.0 325,586 + LU632_RS01645 0.51 -2.3 325,587 - LU632_RS01645 0.51 -0.2 325,650 - LU632_RS01645 0.68 +2.5 325,650 - LU632_RS01645 0.68 -0.2 325,652 + LU632_RS01645 0.69 -0.2 325,652 + LU632_RS01645 0.69 -0.9 325,652 + LU632_RS01645 0.69 -0.8 325,653 - LU632_RS01645 0.69 -1.9 325,653 - LU632_RS01645 0.69 -0.9 325,795 - -1.7 325,922 + LU632_RS01650 0.19 -0.1 325,923 - LU632_RS01650 0.19 +0.5 326,176 + LU632_RS01650 0.47 -0.6 326,176 + LU632_RS01650 0.47 -1.5 326,177 - LU632_RS01650 0.47 -0.1 326,246 + LU632_RS01650 0.55 +1.5 326,246 + LU632_RS01650 0.55 -0.6 326,246 + LU632_RS01650 0.55 +0.9 326,247 - LU632_RS01650 0.55 +0.9 326,360 + LU632_RS01650 0.68 +0.9 326,360 + LU632_RS01650 0.68 +1.4 326,360 + LU632_RS01650 0.68 +1.1 326,361 - LU632_RS01650 0.68 +0.0 326,383 + LU632_RS01650 0.70 -0.4 326,383 + LU632_RS01650 0.70 -1.7 326,383 + LU632_RS01650 0.70 -0.1 326,384 - LU632_RS01650 0.70 +1.3 326,384 - LU632_RS01650 0.70 +1.6 326,384 - LU632_RS01650 0.70 -1.1 326,384 - LU632_RS01650 0.70 +0.2 326,384 - LU632_RS01650 0.70 +1.9 326,385 + LU632_RS01650 0.70 -1.2 326,385 + LU632_RS01650 0.70 +0.1 326,385 + LU632_RS01650 0.70 +0.2 326,386 - LU632_RS01650 0.71 +0.9 326,386 - LU632_RS01650 0.71 -1.9 326,404 + LU632_RS01650 0.73 -0.1 326,404 + LU632_RS01650 0.73 +3.8 326,405 - LU632_RS01650 0.73 +0.2 326,405 - LU632_RS01650 0.73 +0.1 326,648 - -0.1 326,648 - +0.2 326,749 + LU632_RS01655 0.17 -0.1 327,179 - LU632_RS01655 0.87 +1.2 327,179 - LU632_RS01655 0.87 -0.3 327,201 - +1.8 327,201 - -1.0 327,202 + -0.3 327,255 - +1.1 327,255 - -1.8 327,259 - -0.4 327,453 - LU632_RS01660 0.21 +0.1 327,464 + LU632_RS01660 0.22 -1.6 327,573 + LU632_RS01660 0.33 -0.7
Or see this region's nucleotide sequence