Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01585

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01580 and LU632_RS01585 overlap by 1 nucleotidesLU632_RS01585 and LU632_RS01590 are separated by 160 nucleotides LU632_RS01580: LU632_RS01580 - phage portal protein, at 315,812 to 316,870 _RS01580 LU632_RS01585: LU632_RS01585 - terminase family protein, at 316,870 to 318,600 _RS01585 LU632_RS01590: LU632_RS01590 - GPO family capsid scaffolding protein, at 318,761 to 319,597 _RS01590 Position (kb) 316 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 316.215 kb on + strand, within LU632_RS01580at 316.216 kb on - strand, within LU632_RS01580at 316.222 kb on + strand, within LU632_RS01580at 316.223 kb on - strand, within LU632_RS01580at 316.223 kb on - strand, within LU632_RS01580at 316.223 kb on - strand, within LU632_RS01580at 316.223 kb on - strand, within LU632_RS01580at 316.223 kb on - strand, within LU632_RS01580at 316.249 kb on - strand, within LU632_RS01580at 316.249 kb on - strand, within LU632_RS01580at 316.251 kb on + strand, within LU632_RS01580at 316.309 kb on + strand, within LU632_RS01580at 316.310 kb on - strand, within LU632_RS01580at 316.310 kb on - strand, within LU632_RS01580at 316.310 kb on - strand, within LU632_RS01580at 316.311 kb on + strand, within LU632_RS01580at 316.311 kb on + strand, within LU632_RS01580at 316.312 kb on - strand, within LU632_RS01580at 316.322 kb on - strand, within LU632_RS01580at 316.322 kb on - strand, within LU632_RS01580at 316.327 kb on - strand, within LU632_RS01580at 316.387 kb on - strand, within LU632_RS01580at 316.387 kb on - strand, within LU632_RS01580at 316.416 kb on + strand, within LU632_RS01580at 316.416 kb on + strand, within LU632_RS01580at 316.420 kb on + strand, within LU632_RS01580at 316.421 kb on - strand, within LU632_RS01580at 316.421 kb on - strand, within LU632_RS01580at 316.424 kb on - strand, within LU632_RS01580at 316.447 kb on + strand, within LU632_RS01580at 316.448 kb on - strand, within LU632_RS01580at 316.510 kb on - strand, within LU632_RS01580at 316.510 kb on - strand, within LU632_RS01580at 316.584 kb on + strand, within LU632_RS01580at 316.584 kb on + strand, within LU632_RS01580at 316.584 kb on + strand, within LU632_RS01580at 316.584 kb on + strand, within LU632_RS01580at 316.584 kb on + strand, within LU632_RS01580at 316.584 kb on + strand, within LU632_RS01580at 316.585 kb on - strand, within LU632_RS01580at 316.585 kb on - strand, within LU632_RS01580at 316.585 kb on - strand, within LU632_RS01580at 316.808 kb on - strandat 316.991 kb on + strandat 317.035 kb on - strandat 317.098 kb on + strand, within LU632_RS01585at 317.098 kb on + strand, within LU632_RS01585at 317.183 kb on + strand, within LU632_RS01585at 317.183 kb on + strand, within LU632_RS01585at 317.237 kb on + strand, within LU632_RS01585at 317.238 kb on - strand, within LU632_RS01585at 317.238 kb on - strand, within LU632_RS01585at 317.238 kb on - strand, within LU632_RS01585at 317.238 kb on - strand, within LU632_RS01585at 317.469 kb on - strand, within LU632_RS01585at 317.543 kb on + strand, within LU632_RS01585at 317.543 kb on + strand, within LU632_RS01585at 317.543 kb on + strand, within LU632_RS01585at 317.598 kb on + strand, within LU632_RS01585at 317.598 kb on + strand, within LU632_RS01585at 317.598 kb on + strand, within LU632_RS01585at 317.601 kb on - strand, within LU632_RS01585at 317.620 kb on - strand, within LU632_RS01585at 317.638 kb on + strand, within LU632_RS01585at 317.639 kb on - strand, within LU632_RS01585at 317.639 kb on - strand, within LU632_RS01585at 317.798 kb on + strand, within LU632_RS01585at 317.799 kb on - strand, within LU632_RS01585at 317.799 kb on - strand, within LU632_RS01585at 317.829 kb on + strand, within LU632_RS01585at 317.904 kb on - strand, within LU632_RS01585at 317.929 kb on - strand, within LU632_RS01585at 318.065 kb on - strand, within LU632_RS01585at 318.065 kb on - strand, within LU632_RS01585at 318.134 kb on + strand, within LU632_RS01585at 318.580 kb on + strandat 318.580 kb on + strandat 318.595 kb on + strandat 318.595 kb on + strandat 318.596 kb on - strandat 318.596 kb on - strandat 318.596 kb on - strandat 318.733 kb on - strandat 318.776 kb on - strandat 318.787 kb on + strandat 318.915 kb on - strand, within LU632_RS01590at 318.982 kb on + strand, within LU632_RS01590at 319.127 kb on + strand, within LU632_RS01590at 319.127 kb on + strand, within LU632_RS01590at 319.127 kb on + strand, within LU632_RS01590at 319.128 kb on - strand, within LU632_RS01590at 319.128 kb on - strand, within LU632_RS01590at 319.213 kb on + strand, within LU632_RS01590at 319.213 kb on + strand, within LU632_RS01590at 319.213 kb on + strand, within LU632_RS01590at 319.214 kb on - strand, within LU632_RS01590at 319.598 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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316,215 + LU632_RS01580 0.38 -0.8
316,216 - LU632_RS01580 0.38 -1.8
316,222 + LU632_RS01580 0.39 -0.3
316,223 - LU632_RS01580 0.39 -0.8
316,223 - LU632_RS01580 0.39 -1.8
316,223 - LU632_RS01580 0.39 +1.7
316,223 - LU632_RS01580 0.39 +0.1
316,223 - LU632_RS01580 0.39 -0.5
316,249 - LU632_RS01580 0.41 -2.0
316,249 - LU632_RS01580 0.41 -1.1
316,251 + LU632_RS01580 0.41 +0.3
316,309 + LU632_RS01580 0.47 +0.1
316,310 - LU632_RS01580 0.47 +0.5
316,310 - LU632_RS01580 0.47 -0.8
316,310 - LU632_RS01580 0.47 -0.8
316,311 + LU632_RS01580 0.47 -0.7
316,311 + LU632_RS01580 0.47 -0.8
316,312 - LU632_RS01580 0.47 -0.7
316,322 - LU632_RS01580 0.48 -0.5
316,322 - LU632_RS01580 0.48 +0.6
316,327 - LU632_RS01580 0.49 -0.7
316,387 - LU632_RS01580 0.54 -1.0
316,387 - LU632_RS01580 0.54 -1.1
316,416 + LU632_RS01580 0.57 +1.4
316,416 + LU632_RS01580 0.57 +0.9
316,420 + LU632_RS01580 0.57 +0.2
316,421 - LU632_RS01580 0.58 +0.9
316,421 - LU632_RS01580 0.58 -1.6
316,424 - LU632_RS01580 0.58 -0.1
316,447 + LU632_RS01580 0.60 +1.4
316,448 - LU632_RS01580 0.60 +2.1
316,510 - LU632_RS01580 0.66 +2.1
316,510 - LU632_RS01580 0.66 +1.8
316,584 + LU632_RS01580 0.73 +0.2
316,584 + LU632_RS01580 0.73 -1.7
316,584 + LU632_RS01580 0.73 -0.4
316,584 + LU632_RS01580 0.73 -1.3
316,584 + LU632_RS01580 0.73 -1.0
316,584 + LU632_RS01580 0.73 +0.0
316,585 - LU632_RS01580 0.73 +0.1
316,585 - LU632_RS01580 0.73 -2.9
316,585 - LU632_RS01580 0.73 -2.5
316,808 - -1.5
316,991 + +1.2
317,035 - +1.9
317,098 + LU632_RS01585 0.13 -1.4
317,098 + LU632_RS01585 0.13 -0.5
317,183 + LU632_RS01585 0.18 -0.6
317,183 + LU632_RS01585 0.18 -0.8
317,237 + LU632_RS01585 0.21 -0.7
317,238 - LU632_RS01585 0.21 +0.4
317,238 - LU632_RS01585 0.21 +1.2
317,238 - LU632_RS01585 0.21 -0.7
317,238 - LU632_RS01585 0.21 -0.1
317,469 - LU632_RS01585 0.35 +0.3
317,543 + LU632_RS01585 0.39 -2.4
317,543 + LU632_RS01585 0.39 -1.1
317,543 + LU632_RS01585 0.39 +0.9
317,598 + LU632_RS01585 0.42 +0.2
317,598 + LU632_RS01585 0.42 -0.6
317,598 + LU632_RS01585 0.42 +1.7
317,601 - LU632_RS01585 0.42 -0.3
317,620 - LU632_RS01585 0.43 +1.0
317,638 + LU632_RS01585 0.44 +2.3
317,639 - LU632_RS01585 0.44 +2.7
317,639 - LU632_RS01585 0.44 -2.1
317,798 + LU632_RS01585 0.54 +0.3
317,799 - LU632_RS01585 0.54 -0.6
317,799 - LU632_RS01585 0.54 -1.1
317,829 + LU632_RS01585 0.55 -0.1
317,904 - LU632_RS01585 0.60 -0.7
317,929 - LU632_RS01585 0.61 +0.5
318,065 - LU632_RS01585 0.69 -0.4
318,065 - LU632_RS01585 0.69 -0.7
318,134 + LU632_RS01585 0.73 -0.1
318,580 + -3.2
318,580 + -0.1
318,595 + +0.3
318,595 + +0.1
318,596 - +0.4
318,596 - +0.7
318,596 - -0.6
318,733 - +2.4
318,776 - -0.5
318,787 + -0.1
318,915 - LU632_RS01590 0.18 -0.7
318,982 + LU632_RS01590 0.26 -0.1
319,127 + LU632_RS01590 0.44 +2.9
319,127 + LU632_RS01590 0.44 -0.0
319,127 + LU632_RS01590 0.44 -0.7
319,128 - LU632_RS01590 0.44 +0.5
319,128 - LU632_RS01590 0.44 +1.7
319,213 + LU632_RS01590 0.54 +0.2
319,213 + LU632_RS01590 0.54 +3.5
319,213 + LU632_RS01590 0.54 -1.5
319,214 - LU632_RS01590 0.54 +0.9
319,598 + -0.5

Or see this region's nucleotide sequence