Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpcA and LU632_RS01140 are separated by 43 nucleotides LU632_RS01140 and dpaA overlap by 30 nucleotides dpaA and dinB are separated by 235 nucleotides
LU632_RS01135: lpcA - D-sedoheptulose 7-phosphate isomerase, at 241,854 to 242,432
lpcA
LU632_RS01140: LU632_RS01140 - class II glutamine amidotransferase, at 242,476 to 243,243
_RS01140
LU632_RS01145: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 243,214 to 243,957
dpaA
LU632_RS01150: dinB - DNA polymerase IV, at 244,193 to 245,248
dinB
Position (kb) 243
244 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 242.379 kb on - strand at 242.430 kb on + strand at 242.469 kb on + strand at 242.469 kb on + strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.476 kb on - strand at 242.622 kb on + strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.719 kb on - strand, within LU632_RS01140 at 242.745 kb on + strand, within LU632_RS01140 at 242.768 kb on + strand, within LU632_RS01140 at 242.769 kb on - strand, within LU632_RS01140 at 242.778 kb on + strand, within LU632_RS01140 at 242.788 kb on + strand, within LU632_RS01140 at 242.788 kb on + strand, within LU632_RS01140 at 242.789 kb on - strand, within LU632_RS01140 at 242.808 kb on - strand, within LU632_RS01140 at 242.808 kb on - strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.995 kb on - strand, within LU632_RS01140 at 242.995 kb on - strand, within LU632_RS01140 at 243.022 kb on - strand, within LU632_RS01140 at 243.022 kb on - strand, within LU632_RS01140 at 243.274 kb on - strand at 243.290 kb on - strand, within dpaA at 243.294 kb on - strand, within dpaA at 243.492 kb on - strand, within dpaA at 243.492 kb on - strand, within dpaA at 243.495 kb on + strand, within dpaA at 243.495 kb on + strand, within dpaA at 243.496 kb on - strand, within dpaA at 243.547 kb on - strand, within dpaA at 243.564 kb on - strand, within dpaA at 243.601 kb on - strand, within dpaA at 243.907 kb on + strand at 243.975 kb on + strand at 243.975 kb on + strand at 243.987 kb on + strand at 243.988 kb on - strand at 243.988 kb on - strand at 243.988 kb on - strand at 244.034 kb on - strand at 244.051 kb on - strand at 244.198 kb on + strand at 244.210 kb on + strand at 244.210 kb on + strand at 244.324 kb on + strand, within dinB at 244.352 kb on + strand, within dinB at 244.353 kb on - strand, within dinB at 244.427 kb on + strand, within dinB at 244.428 kb on - strand, within dinB at 244.429 kb on + strand, within dinB at 244.430 kb on - strand, within dinB at 244.448 kb on - strand, within dinB at 244.508 kb on + strand, within dinB at 244.508 kb on + strand, within dinB at 244.509 kb on - strand, within dinB at 244.518 kb on + strand, within dinB at 244.518 kb on + strand, within dinB at 244.519 kb on - strand, within dinB at 244.519 kb on - strand, within dinB at 244.539 kb on - strand, within dinB at 244.580 kb on - strand, within dinB at 244.948 kb on + strand, within dinB
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 242,379 - -1.1 242,430 + +0.2 242,469 + -0.1 242,469 + +0.5 242,470 - +3.2 242,470 - -0.1 242,470 - -1.9 242,476 - -0.1 242,622 + LU632_RS01140 0.19 +1.1 242,623 - LU632_RS01140 0.19 -1.7 242,623 - LU632_RS01140 0.19 +1.5 242,623 - LU632_RS01140 0.19 -1.7 242,623 - LU632_RS01140 0.19 -1.9 242,719 - LU632_RS01140 0.32 +0.9 242,745 + LU632_RS01140 0.35 -2.3 242,768 + LU632_RS01140 0.38 +0.9 242,769 - LU632_RS01140 0.38 -0.7 242,778 + LU632_RS01140 0.39 +0.2 242,788 + LU632_RS01140 0.41 -0.2 242,788 + LU632_RS01140 0.41 -0.3 242,789 - LU632_RS01140 0.41 -0.4 242,808 - LU632_RS01140 0.43 -1.9 242,808 - LU632_RS01140 0.43 -0.9 242,994 + LU632_RS01140 0.67 -2.3 242,994 + LU632_RS01140 0.67 +0.0 242,994 + LU632_RS01140 0.67 -0.3 242,995 - LU632_RS01140 0.68 -0.2 242,995 - LU632_RS01140 0.68 -1.1 243,022 - LU632_RS01140 0.71 +0.5 243,022 - LU632_RS01140 0.71 -0.6 243,274 - +2.3 243,290 - dpaA LU632_RS01145 0.10 -0.7 243,294 - dpaA LU632_RS01145 0.11 -0.1 243,492 - dpaA LU632_RS01145 0.37 -0.4 243,492 - dpaA LU632_RS01145 0.37 -0.1 243,495 + dpaA LU632_RS01145 0.38 -1.5 243,495 + dpaA LU632_RS01145 0.38 -1.9 243,496 - dpaA LU632_RS01145 0.38 -0.0 243,547 - dpaA LU632_RS01145 0.45 -0.9 243,564 - dpaA LU632_RS01145 0.47 +1.9 243,601 - dpaA LU632_RS01145 0.52 -0.8 243,907 + -0.7 243,975 + +0.5 243,975 + -1.1 243,987 + -0.1 243,988 - -0.9 243,988 - +1.0 243,988 - -0.2 244,034 - -0.5 244,051 - -0.2 244,198 + -1.0 244,210 + -1.6 244,210 + +0.4 244,324 + dinB LU632_RS01150 0.12 -2.2 244,352 + dinB LU632_RS01150 0.15 +0.9 244,353 - dinB LU632_RS01150 0.15 -1.5 244,427 + dinB LU632_RS01150 0.22 +2.5 244,428 - dinB LU632_RS01150 0.22 +0.8 244,429 + dinB LU632_RS01150 0.22 -0.2 244,430 - dinB LU632_RS01150 0.22 +0.9 244,448 - dinB LU632_RS01150 0.24 +0.2 244,508 + dinB LU632_RS01150 0.30 +1.4 244,508 + dinB LU632_RS01150 0.30 +1.4 244,509 - dinB LU632_RS01150 0.30 -1.0 244,518 + dinB LU632_RS01150 0.31 +0.5 244,518 + dinB LU632_RS01150 0.31 -1.5 244,519 - dinB LU632_RS01150 0.31 +0.3 244,519 - dinB LU632_RS01150 0.31 +4.5 244,539 - dinB LU632_RS01150 0.33 +0.6 244,580 - dinB LU632_RS01150 0.37 +0.4 244,948 + dinB LU632_RS01150 0.71 -1.3
Or see this region's nucleotide sequence