Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssL and tssM are separated by 59 nucleotides tssM and LU632_RS00745 are separated by 51 nucleotides LU632_RS00745 and vgrG are separated by 126 nucleotides
LU632_RS00735: tssL - type VI secretion system protein TssL, long form, at 154,951 to 156,318
tssL
LU632_RS00740: tssM - type VI secretion system membrane subunit TssM, at 156,378 to 160,139
tssM
LU632_RS00745: LU632_RS00745 - hypothetical protein, at 160,191 to 160,835
_RS00745
LU632_RS00750: vgrG - type VI secretion system tip protein VgrG, at 160,962 to 163,334
vgrG
Position (kb) 156
157
158
159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 155.378 kb on + strand, within tssL at 155.378 kb on + strand, within tssL at 155.379 kb on - strand, within tssL at 155.382 kb on + strand, within tssL at 155.383 kb on - strand, within tssL at 155.383 kb on - strand, within tssL at 155.390 kb on + strand, within tssL at 155.409 kb on + strand, within tssL at 155.410 kb on - strand, within tssL at 155.533 kb on + strand, within tssL at 155.563 kb on - strand, within tssL at 155.791 kb on + strand, within tssL at 155.847 kb on - strand, within tssL at 155.849 kb on - strand, within tssL at 155.874 kb on + strand, within tssL at 156.044 kb on + strand, within tssL at 156.144 kb on + strand, within tssL at 156.259 kb on - strand at 156.259 kb on - strand at 156.423 kb on - strand at 156.600 kb on - strand at 156.674 kb on + strand at 156.675 kb on - strand at 156.679 kb on - strand at 156.725 kb on - strand at 156.793 kb on + strand, within tssM at 156.982 kb on + strand, within tssM at 156.986 kb on + strand, within tssM at 157.278 kb on + strand, within tssM at 157.682 kb on + strand, within tssM at 157.969 kb on - strand, within tssM at 158.473 kb on - strand, within tssM at 158.519 kb on - strand, within tssM at 158.549 kb on - strand, within tssM at 158.657 kb on + strand, within tssM at 158.657 kb on + strand, within tssM at 158.658 kb on - strand, within tssM at 158.691 kb on + strand, within tssM at 158.692 kb on - strand, within tssM at 158.693 kb on + strand, within tssM at 158.694 kb on - strand, within tssM at 158.866 kb on - strand, within tssM at 158.866 kb on - strand, within tssM at 158.878 kb on - strand, within tssM at 158.967 kb on + strand, within tssM at 158.967 kb on + strand, within tssM at 158.967 kb on + strand, within tssM at 158.968 kb on - strand, within tssM at 158.968 kb on - strand, within tssM at 158.968 kb on - strand, within tssM at 159.009 kb on - strand, within tssM at 159.158 kb on - strand, within tssM at 159.180 kb on + strand, within tssM at 159.180 kb on + strand, within tssM at 159.181 kb on - strand, within tssM at 159.205 kb on + strand, within tssM at 159.285 kb on + strand, within tssM at 159.285 kb on - strand, within tssM at 159.286 kb on - strand, within tssM at 159.287 kb on + strand, within tssM at 159.287 kb on + strand, within tssM at 159.288 kb on - strand, within tssM at 159.288 kb on - strand, within tssM at 159.395 kb on + strand, within tssM at 159.396 kb on - strand, within tssM at 159.399 kb on + strand, within tssM at 159.402 kb on - strand, within tssM at 159.404 kb on + strand, within tssM at 159.416 kb on - strand, within tssM at 159.468 kb on - strand, within tssM at 159.504 kb on - strand, within tssM at 159.539 kb on + strand, within tssM at 159.584 kb on - strand, within tssM at 159.609 kb on - strand, within tssM at 159.752 kb on + strand, within tssM at 159.771 kb on - strand at 159.787 kb on - strand at 159.787 kb on - strand at 159.787 kb on - strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.789 kb on - strand at 159.789 kb on - strand at 159.811 kb on + strand at 159.938 kb on - strand at 160.038 kb on - strand at 160.114 kb on + strand at 160.441 kb on + strand, within LU632_RS00745 at 160.798 kb on - strand at 161.032 kb on + strand at 161.032 kb on + strand at 161.036 kb on + strand at 161.036 kb on + strand at 161.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 155,378 + tssL LU632_RS00735 0.31 +0.2 155,378 + tssL LU632_RS00735 0.31 -1.2 155,379 - tssL LU632_RS00735 0.31 -0.5 155,382 + tssL LU632_RS00735 0.32 +3.2 155,383 - tssL LU632_RS00735 0.32 -1.6 155,383 - tssL LU632_RS00735 0.32 +0.8 155,390 + tssL LU632_RS00735 0.32 +2.1 155,409 + tssL LU632_RS00735 0.33 -1.1 155,410 - tssL LU632_RS00735 0.34 -1.1 155,533 + tssL LU632_RS00735 0.43 -1.4 155,563 - tssL LU632_RS00735 0.45 -0.1 155,791 + tssL LU632_RS00735 0.61 +1.6 155,847 - tssL LU632_RS00735 0.65 -0.7 155,849 - tssL LU632_RS00735 0.66 -2.1 155,874 + tssL LU632_RS00735 0.67 +1.8 156,044 + tssL LU632_RS00735 0.80 +0.2 156,144 + tssL LU632_RS00735 0.87 -0.3 156,259 - +1.1 156,259 - -2.3 156,423 - +1.2 156,600 - -1.6 156,674 + +0.5 156,675 - -0.6 156,679 - -0.3 156,725 - +2.0 156,793 + tssM LU632_RS00740 0.11 +2.5 156,982 + tssM LU632_RS00740 0.16 +0.9 156,986 + tssM LU632_RS00740 0.16 -0.4 157,278 + tssM LU632_RS00740 0.24 -0.3 157,682 + tssM LU632_RS00740 0.35 +0.1 157,969 - tssM LU632_RS00740 0.42 -1.1 158,473 - tssM LU632_RS00740 0.56 +1.9 158,519 - tssM LU632_RS00740 0.57 -2.1 158,549 - tssM LU632_RS00740 0.58 +1.4 158,657 + tssM LU632_RS00740 0.61 -0.9 158,657 + tssM LU632_RS00740 0.61 -0.0 158,658 - tssM LU632_RS00740 0.61 +0.0 158,691 + tssM LU632_RS00740 0.61 -0.6 158,692 - tssM LU632_RS00740 0.62 +1.2 158,693 + tssM LU632_RS00740 0.62 +0.2 158,694 - tssM LU632_RS00740 0.62 +1.2 158,866 - tssM LU632_RS00740 0.66 +1.5 158,866 - tssM LU632_RS00740 0.66 +1.1 158,878 - tssM LU632_RS00740 0.66 +0.2 158,967 + tssM LU632_RS00740 0.69 -1.4 158,967 + tssM LU632_RS00740 0.69 +1.5 158,967 + tssM LU632_RS00740 0.69 +1.7 158,968 - tssM LU632_RS00740 0.69 +0.9 158,968 - tssM LU632_RS00740 0.69 -0.7 158,968 - tssM LU632_RS00740 0.69 +0.6 159,009 - tssM LU632_RS00740 0.70 +1.3 159,158 - tssM LU632_RS00740 0.74 +0.2 159,180 + tssM LU632_RS00740 0.74 -1.7 159,180 + tssM LU632_RS00740 0.74 -3.2 159,181 - tssM LU632_RS00740 0.75 +0.0 159,205 + tssM LU632_RS00740 0.75 -0.2 159,285 + tssM LU632_RS00740 0.77 -1.2 159,285 - tssM LU632_RS00740 0.77 -0.4 159,286 - tssM LU632_RS00740 0.77 -2.0 159,287 + tssM LU632_RS00740 0.77 +0.5 159,287 + tssM LU632_RS00740 0.77 -0.4 159,288 - tssM LU632_RS00740 0.77 +2.0 159,288 - tssM LU632_RS00740 0.77 -0.4 159,395 + tssM LU632_RS00740 0.80 -0.4 159,396 - tssM LU632_RS00740 0.80 +0.2 159,399 + tssM LU632_RS00740 0.80 +0.4 159,402 - tssM LU632_RS00740 0.80 -2.4 159,404 + tssM LU632_RS00740 0.80 -1.0 159,416 - tssM LU632_RS00740 0.81 -0.3 159,468 - tssM LU632_RS00740 0.82 -1.1 159,504 - tssM LU632_RS00740 0.83 +0.1 159,539 + tssM LU632_RS00740 0.84 +0.1 159,584 - tssM LU632_RS00740 0.85 -0.5 159,609 - tssM LU632_RS00740 0.86 +0.4 159,752 + tssM LU632_RS00740 0.90 -0.1 159,771 - +1.3 159,787 - -1.4 159,787 - +0.7 159,787 - +2.0 159,788 + +4.9 159,788 + +0.5 159,788 + +0.2 159,788 + -2.4 159,789 - +0.7 159,789 - +0.7 159,811 + -0.7 159,938 - +0.1 160,038 - -0.9 160,114 + -0.9 160,441 + LU632_RS00745 0.39 +5.5 160,798 - -0.0 161,032 + -1.4 161,032 + +0.8 161,036 + -0.9 161,036 + +2.3 161,037 - +1.5
Or see this region's nucleotide sequence