Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctS and sctT are separated by 12 nucleotides sctT and LU632_RS00505 are separated by 9 nucleotides LU632_RS00505 and sicA are separated by 134 nucleotides sicA and sctE are separated by 14 nucleotides
LU632_RS00495: sctS - type III secretion system export apparatus subunit SctS, at 101,652 to 101,906
sctS
LU632_RS00500: sctT - type III secretion system export apparatus subunit SctT, at 101,919 to 102,683
sctT
LU632_RS00505: LU632_RS00505 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 102,693 to 103,784
_RS00505
LU632_RS00510: sicA - type III secretion system translocator chaperone SicA, at 103,919 to 104,455
sicA
LU632_RS00515: sctE - type III secretion system translocon subunit SctE, at 104,470 to 106,341
sctE
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.750 kb on - strand, within sctS at 101.905 kb on - strand at 101.905 kb on - strand at 101.938 kb on - strand at 101.955 kb on - strand at 102.007 kb on + strand, within sctT at 102.010 kb on + strand, within sctT at 102.050 kb on - strand, within sctT at 102.110 kb on + strand, within sctT at 102.345 kb on - strand, within sctT at 102.348 kb on + strand, within sctT at 102.349 kb on - strand, within sctT at 102.349 kb on - strand, within sctT at 102.352 kb on + strand, within sctT at 102.465 kb on - strand, within sctT at 102.465 kb on - strand, within sctT at 102.467 kb on - strand, within sctT at 103.541 kb on + strand, within LU632_RS00505 at 103.695 kb on - strand at 103.695 kb on - strand at 103.789 kb on + strand at 103.814 kb on - strand at 103.840 kb on - strand at 104.062 kb on + strand, within sicA at 104.213 kb on + strand, within sicA at 104.308 kb on - strand, within sicA at 104.353 kb on + strand, within sicA at 104.636 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 101,750 - sctS LU632_RS00495 0.38 +0.1 101,905 - -0.4 101,905 - +1.0 101,938 - +0.1 101,955 - +0.6 102,007 + sctT LU632_RS00500 0.12 -0.4 102,010 + sctT LU632_RS00500 0.12 +0.6 102,050 - sctT LU632_RS00500 0.17 +1.4 102,110 + sctT LU632_RS00500 0.25 -2.5 102,345 - sctT LU632_RS00500 0.56 +0.3 102,348 + sctT LU632_RS00500 0.56 +0.5 102,349 - sctT LU632_RS00500 0.56 -0.6 102,349 - sctT LU632_RS00500 0.56 -0.3 102,352 + sctT LU632_RS00500 0.57 +0.5 102,465 - sctT LU632_RS00500 0.71 -1.7 102,465 - sctT LU632_RS00500 0.71 +2.2 102,467 - sctT LU632_RS00500 0.72 +0.4 103,541 + LU632_RS00505 0.78 -1.9 103,695 - +1.9 103,695 - +0.9 103,789 + +2.1 103,814 - -0.7 103,840 - +1.2 104,062 + sicA LU632_RS00510 0.27 +0.2 104,213 + sicA LU632_RS00510 0.55 +0.8 104,308 - sicA LU632_RS00510 0.72 +1.8 104,353 + sicA LU632_RS00510 0.81 -0.1 104,636 + +2.1
Or see this region's nucleotide sequence