Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00480 and LU632_RS00485 overlap by 4 nucleotides LU632_RS00485 and LU632_RS00490 overlap by 11 nucleotides LU632_RS00490 and sctS overlap by 4 nucleotides sctS and sctT are separated by 12 nucleotides
LU632_RS00480: LU632_RS00480 - hypothetical protein, at 99,163 to 100,071
_RS00480
LU632_RS00485: LU632_RS00485 - FliM/FliN family flagellar motor switch protein, at 100,068 to 100,994
_RS00485
LU632_RS00490: LU632_RS00490 - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 100,984 to 101,655
_RS00490
LU632_RS00495: sctS - type III secretion system export apparatus subunit SctS, at 101,652 to 101,906
sctS
LU632_RS00500: sctT - type III secretion system export apparatus subunit SctT, at 101,919 to 102,683
sctT
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 100.047 kb on + strand at 100.047 kb on + strand at 100.166 kb on + strand, within LU632_RS00485 at 100.166 kb on + strand, within LU632_RS00485 at 100.184 kb on - strand, within LU632_RS00485 at 100.184 kb on - strand, within LU632_RS00485 at 100.184 kb on - strand, within LU632_RS00485 at 100.227 kb on + strand, within LU632_RS00485 at 100.228 kb on - strand, within LU632_RS00485 at 100.230 kb on - strand, within LU632_RS00485 at 100.230 kb on - strand, within LU632_RS00485 at 100.338 kb on - strand, within LU632_RS00485 at 100.376 kb on + strand, within LU632_RS00485 at 100.377 kb on - strand, within LU632_RS00485 at 100.498 kb on + strand, within LU632_RS00485 at 100.529 kb on + strand, within LU632_RS00485 at 100.530 kb on - strand, within LU632_RS00485 at 100.605 kb on + strand, within LU632_RS00485 at 100.751 kb on - strand, within LU632_RS00485 at 101.059 kb on - strand, within LU632_RS00490 at 101.096 kb on + strand, within LU632_RS00490 at 101.459 kb on + strand, within LU632_RS00490 at 101.750 kb on - strand, within sctS at 101.905 kb on - strand at 101.905 kb on - strand at 101.938 kb on - strand at 101.955 kb on - strand at 102.007 kb on + strand, within sctT at 102.010 kb on + strand, within sctT at 102.050 kb on - strand, within sctT at 102.110 kb on + strand, within sctT at 102.345 kb on - strand, within sctT at 102.348 kb on + strand, within sctT at 102.349 kb on - strand, within sctT at 102.349 kb on - strand, within sctT at 102.352 kb on + strand, within sctT at 102.465 kb on - strand, within sctT at 102.465 kb on - strand, within sctT at 102.467 kb on - strand, within sctT
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 100,047 + +1.2 100,047 + +0.6 100,166 + LU632_RS00485 0.11 -0.9 100,166 + LU632_RS00485 0.11 +1.5 100,184 - LU632_RS00485 0.13 -0.5 100,184 - LU632_RS00485 0.13 +2.7 100,184 - LU632_RS00485 0.13 -0.5 100,227 + LU632_RS00485 0.17 +0.6 100,228 - LU632_RS00485 0.17 +1.9 100,230 - LU632_RS00485 0.17 +0.1 100,230 - LU632_RS00485 0.17 -1.9 100,338 - LU632_RS00485 0.29 -0.1 100,376 + LU632_RS00485 0.33 +0.1 100,377 - LU632_RS00485 0.33 -0.6 100,498 + LU632_RS00485 0.46 -0.2 100,529 + LU632_RS00485 0.50 +1.6 100,530 - LU632_RS00485 0.50 -0.7 100,605 + LU632_RS00485 0.58 +0.3 100,751 - LU632_RS00485 0.74 -0.6 101,059 - LU632_RS00490 0.11 +2.9 101,096 + LU632_RS00490 0.17 -2.7 101,459 + LU632_RS00490 0.71 +0.9 101,750 - sctS LU632_RS00495 0.38 +0.1 101,905 - -0.4 101,905 - +1.0 101,938 - +0.1 101,955 - +0.6 102,007 + sctT LU632_RS00500 0.12 -0.4 102,010 + sctT LU632_RS00500 0.12 +0.6 102,050 - sctT LU632_RS00500 0.17 +1.4 102,110 + sctT LU632_RS00500 0.25 -2.5 102,345 - sctT LU632_RS00500 0.56 +0.3 102,348 + sctT LU632_RS00500 0.56 +0.5 102,349 - sctT LU632_RS00500 0.56 -0.6 102,349 - sctT LU632_RS00500 0.56 -0.3 102,352 + sctT LU632_RS00500 0.57 +0.5 102,465 - sctT LU632_RS00500 0.71 -1.7 102,465 - sctT LU632_RS00500 0.71 +2.2 102,467 - sctT LU632_RS00500 0.72 +0.4
Or see this region's nucleotide sequence