Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00350 and LU632_RS00355 are separated by 183 nucleotides LU632_RS00355 and LU632_RS00360 are separated by 33 nucleotides LU632_RS00360 and LU632_RS00365 are separated by 102 nucleotides LU632_RS00365 and LU632_RS00370 overlap by 4 nucleotides
LU632_RS00350: LU632_RS00350 - polysaccharide lyase family protein, at 74,504 to 76,129
_RS00350
LU632_RS00355: LU632_RS00355 - ISKra4 family transposase, at 76,313 to 76,504
_RS00355
LU632_RS00360: LU632_RS00360 - Tn3 family transposase, at 76,538 to 77,003
_RS00360
LU632_RS00365: LU632_RS00365 - hypothetical protein, at 77,106 to 77,372
_RS00365
LU632_RS00370: LU632_RS00370 - Rpn family recombination-promoting nuclease/putative transposase, at 77,369 to 78,294
_RS00370
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 75.538 kb on - strand, within LU632_RS00350 at 75.613 kb on + strand, within LU632_RS00350 at 75.695 kb on + strand, within LU632_RS00350 at 75.695 kb on + strand, within LU632_RS00350 at 75.716 kb on + strand, within LU632_RS00350 at 75.755 kb on - strand, within LU632_RS00350 at 75.788 kb on + strand, within LU632_RS00350 at 75.788 kb on + strand, within LU632_RS00350 at 75.789 kb on - strand, within LU632_RS00350 at 75.792 kb on - strand, within LU632_RS00350 at 75.792 kb on - strand, within LU632_RS00350 at 75.863 kb on - strand, within LU632_RS00350 at 75.926 kb on + strand, within LU632_RS00350 at 75.927 kb on - strand, within LU632_RS00350 at 75.976 kb on + strand at 75.976 kb on + strand at 75.981 kb on - strand at 75.996 kb on + strand at 75.996 kb on + strand at 75.997 kb on - strand at 75.997 kb on - strand at 76.008 kb on - strand at 76.097 kb on + strand at 76.127 kb on + strand at 76.127 kb on + strand at 76.128 kb on - strand at 76.142 kb on + strand at 76.143 kb on - strand at 76.143 kb on - strand at 76.314 kb on + strand at 76.314 kb on + strand at 76.315 kb on - strand at 76.315 kb on - strand at 76.434 kb on + strand, within LU632_RS00355 at 76.530 kb on - strand at 76.530 kb on - strand at 76.530 kb on - strand at 76.534 kb on + strand at 76.555 kb on - strand at 76.587 kb on + strand, within LU632_RS00360 at 76.624 kb on - strand, within LU632_RS00360 at 76.624 kb on - strand, within LU632_RS00360 at 76.624 kb on - strand, within LU632_RS00360 at 76.624 kb on - strand, within LU632_RS00360 at 76.625 kb on + strand, within LU632_RS00360 at 76.626 kb on - strand, within LU632_RS00360 at 76.641 kb on + strand, within LU632_RS00360 at 76.737 kb on - strand, within LU632_RS00360 at 76.737 kb on - strand, within LU632_RS00360 at 76.980 kb on - strand at 77.068 kb on - strand at 77.069 kb on + strand at 77.069 kb on + strand at 77.070 kb on - strand at 77.112 kb on - strand at 77.186 kb on + strand, within LU632_RS00365 at 77.187 kb on - strand, within LU632_RS00365 at 77.187 kb on - strand, within LU632_RS00365 at 77.187 kb on - strand, within LU632_RS00365 at 77.190 kb on + strand, within LU632_RS00365 at 77.191 kb on - strand, within LU632_RS00365 at 77.191 kb on - strand, within LU632_RS00365 at 77.242 kb on + strand, within LU632_RS00365 at 77.243 kb on - strand, within LU632_RS00365 at 77.370 kb on + strand at 77.371 kb on - strand at 77.426 kb on - strand at 77.566 kb on + strand, within LU632_RS00370 at 77.566 kb on + strand, within LU632_RS00370 at 77.632 kb on + strand, within LU632_RS00370 at 77.632 kb on + strand, within LU632_RS00370 at 77.632 kb on + strand, within LU632_RS00370 at 77.633 kb on - strand, within LU632_RS00370 at 77.633 kb on - strand, within LU632_RS00370 at 77.633 kb on - strand, within LU632_RS00370 at 77.633 kb on - strand, within LU632_RS00370 at 77.633 kb on - strand, within LU632_RS00370 at 77.634 kb on + strand, within LU632_RS00370 at 77.635 kb on - strand, within LU632_RS00370 at 77.635 kb on - strand, within LU632_RS00370 at 77.635 kb on - strand, within LU632_RS00370 at 77.636 kb on + strand, within LU632_RS00370 at 77.636 kb on + strand, within LU632_RS00370 at 77.636 kb on + strand, within LU632_RS00370 at 77.636 kb on + strand, within LU632_RS00370 at 77.636 kb on + strand, within LU632_RS00370 at 77.636 kb on + strand, within LU632_RS00370 at 77.636 kb on + strand, within LU632_RS00370 at 77.641 kb on + strand, within LU632_RS00370 at 77.642 kb on - strand, within LU632_RS00370 at 77.733 kb on + strand, within LU632_RS00370 at 77.733 kb on + strand, within LU632_RS00370 at 77.734 kb on - strand, within LU632_RS00370 at 77.913 kb on - strand, within LU632_RS00370
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 75,538 - LU632_RS00350 0.64 +0.7 75,613 + LU632_RS00350 0.68 +0.5 75,695 + LU632_RS00350 0.73 +0.1 75,695 + LU632_RS00350 0.73 +1.5 75,716 + LU632_RS00350 0.75 +0.2 75,755 - LU632_RS00350 0.77 -1.1 75,788 + LU632_RS00350 0.79 -0.4 75,788 + LU632_RS00350 0.79 -2.3 75,789 - LU632_RS00350 0.79 +2.5 75,792 - LU632_RS00350 0.79 +0.9 75,792 - LU632_RS00350 0.79 +0.2 75,863 - LU632_RS00350 0.84 -0.4 75,926 + LU632_RS00350 0.87 -1.0 75,927 - LU632_RS00350 0.88 -0.9 75,976 + +0.3 75,976 + +0.8 75,981 - +2.5 75,996 + +0.7 75,996 + -0.1 75,997 - -0.3 75,997 - +1.7 76,008 - +0.2 76,097 + -2.6 76,127 + -2.7 76,127 + +0.9 76,128 - -0.7 76,142 + +0.9 76,143 - -0.2 76,143 - -1.7 76,314 + +0.1 76,314 + -0.5 76,315 - +0.6 76,315 - +0.2 76,434 + LU632_RS00355 0.63 -0.7 76,530 - -1.3 76,530 - -0.5 76,530 - +0.9 76,534 + -1.3 76,555 - +5.2 76,587 + LU632_RS00360 0.11 +1.9 76,624 - LU632_RS00360 0.18 +4.2 76,624 - LU632_RS00360 0.18 -1.0 76,624 - LU632_RS00360 0.18 +1.2 76,624 - LU632_RS00360 0.18 +2.1 76,625 + LU632_RS00360 0.19 -1.9 76,626 - LU632_RS00360 0.19 +1.9 76,641 + LU632_RS00360 0.22 +2.2 76,737 - LU632_RS00360 0.43 +0.5 76,737 - LU632_RS00360 0.43 +0.4 76,980 - +1.3 77,068 - -0.1 77,069 + +0.9 77,069 + -0.3 77,070 - -0.5 77,112 - +0.6 77,186 + LU632_RS00365 0.30 -2.7 77,187 - LU632_RS00365 0.30 -0.1 77,187 - LU632_RS00365 0.30 -0.3 77,187 - LU632_RS00365 0.30 -0.6 77,190 + LU632_RS00365 0.31 -0.2 77,191 - LU632_RS00365 0.32 -1.2 77,191 - LU632_RS00365 0.32 +2.2 77,242 + LU632_RS00365 0.51 -1.3 77,243 - LU632_RS00365 0.51 +0.7 77,370 + -1.3 77,371 - +0.9 77,426 - -2.4 77,566 + LU632_RS00370 0.21 +2.0 77,566 + LU632_RS00370 0.21 -1.0 77,632 + LU632_RS00370 0.28 +0.1 77,632 + LU632_RS00370 0.28 -0.7 77,632 + LU632_RS00370 0.28 -0.2 77,633 - LU632_RS00370 0.29 +1.4 77,633 - LU632_RS00370 0.29 -2.9 77,633 - LU632_RS00370 0.29 -0.3 77,633 - LU632_RS00370 0.29 +2.2 77,633 - LU632_RS00370 0.29 +0.1 77,634 + LU632_RS00370 0.29 -0.4 77,635 - LU632_RS00370 0.29 -0.2 77,635 - LU632_RS00370 0.29 -0.1 77,635 - LU632_RS00370 0.29 +0.9 77,636 + LU632_RS00370 0.29 +0.3 77,636 + LU632_RS00370 0.29 +0.5 77,636 + LU632_RS00370 0.29 -0.7 77,636 + LU632_RS00370 0.29 +0.2 77,636 + LU632_RS00370 0.29 -1.4 77,636 + LU632_RS00370 0.29 +0.1 77,636 + LU632_RS00370 0.29 -0.3 77,641 + LU632_RS00370 0.29 +3.2 77,642 - LU632_RS00370 0.29 +3.7 77,733 + LU632_RS00370 0.39 +2.6 77,733 + LU632_RS00370 0.39 -1.0 77,734 - LU632_RS00370 0.39 -0.9 77,913 - LU632_RS00370 0.59 -1.1
Or see this region's nucleotide sequence