Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00105 and LU632_RS00110 are separated by 46 nucleotides LU632_RS00110 and LU632_RS00115 are separated by 107 nucleotides LU632_RS00115 and LU632_RS00120 are separated by 48 nucleotides LU632_RS00120 and sodA are separated by 135 nucleotides
LU632_RS00105: LU632_RS00105 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,353 to 21,589
_RS00105
LU632_RS00110: LU632_RS00110 - hypothetical protein, at 21,636 to 22,070
_RS00110
LU632_RS00115: LU632_RS00115 - acyltransferase, at 22,178 to 23,233
_RS00115
LU632_RS00120: LU632_RS00120 - IS5/IS1182 family transposase, at 23,282 to 23,383
_RS00120
LU632_RS00125: sodA - superoxide dismutase [Mn], at 23,519 to 24,136
sodA
Position (kb) 22
23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 21.194 kb on - strand, within LU632_RS00105 at 21.194 kb on - strand, within LU632_RS00105 at 21.209 kb on - strand, within LU632_RS00105 at 21.333 kb on - strand, within LU632_RS00105 at 21.333 kb on - strand, within LU632_RS00105 at 21.434 kb on - strand, within LU632_RS00105 at 21.495 kb on + strand at 21.496 kb on - strand at 21.583 kb on - strand at 21.742 kb on - strand, within LU632_RS00110 at 21.742 kb on - strand, within LU632_RS00110 at 21.777 kb on + strand, within LU632_RS00110 at 21.777 kb on + strand, within LU632_RS00110 at 21.778 kb on - strand, within LU632_RS00110 at 21.929 kb on + strand, within LU632_RS00110 at 21.952 kb on - strand, within LU632_RS00110 at 21.999 kb on + strand, within LU632_RS00110 at 22.000 kb on - strand, within LU632_RS00110 at 22.000 kb on - strand, within LU632_RS00110 at 22.003 kb on - strand, within LU632_RS00110 at 22.003 kb on - strand, within LU632_RS00110 at 22.098 kb on - strand at 22.146 kb on + strand at 22.146 kb on + strand at 22.149 kb on - strand at 22.151 kb on + strand at 22.151 kb on + strand at 22.151 kb on + strand at 22.320 kb on - strand, within LU632_RS00115 at 22.460 kb on + strand, within LU632_RS00115 at 22.460 kb on + strand, within LU632_RS00115 at 22.460 kb on + strand, within LU632_RS00115 at 22.610 kb on + strand, within LU632_RS00115 at 22.611 kb on - strand, within LU632_RS00115 at 22.650 kb on - strand, within LU632_RS00115 at 22.650 kb on - strand, within LU632_RS00115 at 22.670 kb on + strand, within LU632_RS00115 at 22.670 kb on + strand, within LU632_RS00115 at 22.796 kb on - strand, within LU632_RS00115 at 22.814 kb on + strand, within LU632_RS00115 at 22.815 kb on - strand, within LU632_RS00115 at 22.965 kb on - strand, within LU632_RS00115 at 23.029 kb on + strand, within LU632_RS00115 at 23.029 kb on + strand, within LU632_RS00115 at 23.037 kb on - strand, within LU632_RS00115 at 23.037 kb on - strand, within LU632_RS00115 at 23.041 kb on - strand, within LU632_RS00115 at 23.089 kb on + strand, within LU632_RS00115 at 23.093 kb on - strand, within LU632_RS00115 at 23.102 kb on + strand, within LU632_RS00115 at 23.102 kb on + strand, within LU632_RS00115 at 23.103 kb on - strand, within LU632_RS00115 at 23.144 kb on + strand at 23.273 kb on - strand at 23.285 kb on - strand at 23.374 kb on + strand at 23.446 kb on + strand at 23.455 kb on - strand at 23.455 kb on - strand at 23.468 kb on + strand at 23.472 kb on + strand at 23.472 kb on + strand at 24.134 kb on + strand at 24.135 kb on - strand at 24.135 kb on - strand at 24.138 kb on + strand at 24.139 kb on - strand at 24.207 kb on + strand at 24.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 21,194 - LU632_RS00105 0.68 -2.4 21,194 - LU632_RS00105 0.68 -1.9 21,209 - LU632_RS00105 0.69 +0.7 21,333 - LU632_RS00105 0.79 -0.0 21,333 - LU632_RS00105 0.79 -0.1 21,434 - LU632_RS00105 0.87 +0.6 21,495 + -0.6 21,496 - -0.3 21,583 - -2.9 21,742 - LU632_RS00110 0.24 +0.9 21,742 - LU632_RS00110 0.24 -0.1 21,777 + LU632_RS00110 0.32 +0.6 21,777 + LU632_RS00110 0.32 -0.9 21,778 - LU632_RS00110 0.33 +2.8 21,929 + LU632_RS00110 0.67 -0.1 21,952 - LU632_RS00110 0.73 +0.9 21,999 + LU632_RS00110 0.83 -1.3 22,000 - LU632_RS00110 0.84 -1.2 22,000 - LU632_RS00110 0.84 +3.1 22,003 - LU632_RS00110 0.84 -1.1 22,003 - LU632_RS00110 0.84 +0.2 22,098 - +3.9 22,146 + +0.8 22,146 + +0.3 22,149 - +2.7 22,151 + -1.4 22,151 + -0.4 22,151 + -0.1 22,320 - LU632_RS00115 0.13 +1.7 22,460 + LU632_RS00115 0.27 +1.5 22,460 + LU632_RS00115 0.27 +2.9 22,460 + LU632_RS00115 0.27 +3.0 22,610 + LU632_RS00115 0.41 +2.6 22,611 - LU632_RS00115 0.41 +2.8 22,650 - LU632_RS00115 0.45 +3.8 22,650 - LU632_RS00115 0.45 +3.4 22,670 + LU632_RS00115 0.47 +2.8 22,670 + LU632_RS00115 0.47 +2.2 22,796 - LU632_RS00115 0.59 +1.9 22,814 + LU632_RS00115 0.60 +3.4 22,815 - LU632_RS00115 0.60 +0.9 22,965 - LU632_RS00115 0.75 +2.4 23,029 + LU632_RS00115 0.81 +2.6 23,029 + LU632_RS00115 0.81 +2.0 23,037 - LU632_RS00115 0.81 +3.0 23,037 - LU632_RS00115 0.81 +3.6 23,041 - LU632_RS00115 0.82 +2.1 23,089 + LU632_RS00115 0.86 +0.6 23,093 - LU632_RS00115 0.87 +2.9 23,102 + LU632_RS00115 0.88 +4.0 23,102 + LU632_RS00115 0.88 +4.4 23,103 - LU632_RS00115 0.88 +1.4 23,144 + +5.4 23,273 - -1.7 23,285 - +0.8 23,374 + -2.6 23,446 + +0.1 23,455 - -0.1 23,455 - +5.1 23,468 + +0.3 23,472 + -0.5 23,472 + -1.3 24,134 + +0.9 24,135 - +1.5 24,135 - -0.4 24,138 + +0.9 24,139 - -1.1 24,207 + -0.7 24,208 - +0.0
Or see this region's nucleotide sequence