Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF953 and GFF954 are separated by 624 nucleotides GFF954 and GFF955 are separated by 103 nucleotides GFF955 and GFF956 are separated by 114 nucleotides
GFF953 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 688,299 to 689,090
GFF953
GFF954 - Mobile element protein, at 689,715 to 689,921
GFF954
GFF955 - Mobile element protein, at 690,025 to 690,189
GFF955
GFF956 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 690,304 to 691,989
GFF956
Position (kb) 690
691 Strain fitness (log2 ratio) -1
0
1
2 at 689.059 kb on + strand at 689.273 kb on + strand at 689.274 kb on - strand at 689.414 kb on - strand at 689.539 kb on + strand at 689.539 kb on + strand at 689.539 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.619 kb on - strand at 689.619 kb on - strand at 689.619 kb on - strand at 689.620 kb on - strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.713 kb on - strand at 689.713 kb on - strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.965 kb on + strand at 689.965 kb on + strand at 689.966 kb on - strand at 689.966 kb on - strand at 689.966 kb on - strand at 689.966 kb on - strand at 690.028 kb on + strand at 690.028 kb on + strand at 690.028 kb on + strand at 690.028 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.037 kb on + strand at 690.066 kb on + strand, within GFF955 at 690.067 kb on - strand, within GFF955 at 690.127 kb on + strand, within GFF955 at 690.127 kb on + strand, within GFF955 at 690.127 kb on + strand, within GFF955 at 690.128 kb on - strand, within GFF955 at 690.128 kb on - strand, within GFF955 at 690.187 kb on + strand at 690.188 kb on - strand at 690.235 kb on + strand at 690.236 kb on - strand at 690.236 kb on - strand at 690.274 kb on + strand at 690.275 kb on - strand at 690.275 kb on - strand at 690.285 kb on - strand at 690.306 kb on - strand at 690.317 kb on + strand at 690.317 kb on + strand at 690.318 kb on - strand at 690.477 kb on - strand, within GFF956 at 690.477 kb on - strand, within GFF956 at 690.497 kb on + strand, within GFF956 at 690.498 kb on - strand, within GFF956 at 690.498 kb on - strand, within GFF956 at 690.974 kb on + strand, within GFF956 at 691.160 kb on + strand, within GFF956 at 691.160 kb on + strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 689,059 + +0.7 689,273 + +1.4 689,274 - +0.7 689,414 - -0.0 689,539 + +1.0 689,539 + +0.5 689,539 + -0.3 689,582 + +0.3 689,582 + +2.1 689,582 + -0.3 689,582 + -0.2 689,583 - -0.2 689,583 - -0.0 689,583 - +0.3 689,583 - +0.5 689,618 + -0.8 689,618 + +2.7 689,618 + -0.4 689,618 + +0.0 689,618 + +0.7 689,618 + +0.6 689,618 + +0.3 689,619 - -0.2 689,619 - -0.6 689,619 - +0.4 689,620 - +0.0 689,621 + -0.1 689,621 + +0.1 689,621 + +0.7 689,621 + +0.0 689,622 - -0.2 689,622 - -0.1 689,622 - -0.7 689,622 - -0.6 689,622 - -1.1 689,622 - -1.2 689,712 + -0.2 689,712 + -0.1 689,712 + +0.0 689,712 + +0.7 689,712 + -0.0 689,712 + -0.6 689,713 - -0.1 689,713 - +0.0 689,946 + +0.3 689,946 + +0.3 689,946 + -0.1 689,946 + +0.5 689,946 + +0.3 689,947 - +0.5 689,947 - +0.1 689,947 - -0.3 689,947 - +1.4 689,947 - -0.3 689,947 - +1.7 689,965 + -0.1 689,965 + +0.4 689,966 - -0.3 689,966 - -0.3 689,966 - +0.1 689,966 - +0.1 690,028 + +0.6 690,028 + +0.1 690,028 + -0.2 690,028 - -0.4 690,029 - +0.7 690,029 - +0.2 690,029 - +0.3 690,029 - -0.6 690,029 - -0.3 690,029 - +0.4 690,037 + -0.2 690,066 + GFF955 0.25 -0.7 690,067 - GFF955 0.25 -0.1 690,127 + GFF955 0.62 -0.1 690,127 + GFF955 0.62 -0.2 690,127 + GFF955 0.62 +0.0 690,128 - GFF955 0.62 +0.3 690,128 - GFF955 0.62 -0.8 690,187 + -0.3 690,188 - +0.4 690,235 + -0.6 690,236 - +1.0 690,236 - +0.0 690,274 + +0.3 690,275 - -0.1 690,275 - +0.6 690,285 - -0.1 690,306 - +0.3 690,317 + -0.5 690,317 + +0.1 690,318 - -0.3 690,477 - GFF956 0.10 -0.3 690,477 - GFF956 0.10 -0.4 690,497 + GFF956 0.11 +0.5 690,498 - GFF956 0.12 -0.3 690,498 - GFF956 0.12 -0.6 690,974 + GFF956 0.40 -0.1 691,160 + GFF956 0.51 -0.9 691,160 + GFF956 0.51 +0.7 691,161 - GFF956 0.51 +0.5 691,161 - GFF956 0.51 -0.5 691,161 - GFF956 0.51 +1.7 691,161 - GFF956 0.51 +0.2 691,161 - GFF956 0.51 -0.3
Or see this region's nucleotide sequence