Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF90 and GFF91 are separated by 144 nucleotides GFF91 and GFF92 are separated by 29 nucleotides GFF92 and GFF93 are separated by 347 nucleotides
GFF90 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 99,070 to 100,563
GFF90
GFF91 - hypothetical protein, at 100,708 to 102,264
GFF91
GFF92 - hypothetical protein, at 102,294 to 102,878
GFF92
GFF93 - Cytochrome B561, at 103,226 to 103,669
GFF93
Position (kb) 100
101
102
103 Strain fitness (log2 ratio) -2
-1
0
1 at 99.850 kb on + strand, within GFF90 at 100.489 kb on + strand at 100.837 kb on + strand at 100.837 kb on + strand at 100.837 kb on + strand at 101.156 kb on - strand, within GFF91 at 101.260 kb on + strand, within GFF91 at 101.260 kb on + strand, within GFF91 at 101.360 kb on - strand, within GFF91 at 101.477 kb on - strand, within GFF91 at 101.513 kb on - strand, within GFF91 at 102.064 kb on + strand, within GFF91 at 102.065 kb on - strand, within GFF91 at 102.065 kb on - strand, within GFF91 at 102.085 kb on + strand, within GFF91 at 102.085 kb on + strand, within GFF91 at 102.086 kb on - strand, within GFF91 at 102.086 kb on - strand, within GFF91 at 102.804 kb on + strand, within GFF92 at 102.805 kb on - strand, within GFF92 at 102.805 kb on - strand, within GFF92 at 102.971 kb on - strand at 103.049 kb on - strand at 103.082 kb on + strand at 103.092 kb on + strand at 103.092 kb on + strand at 103.092 kb on + strand at 103.092 kb on + strand at 103.136 kb on + strand at 103.136 kb on + strand at 103.136 kb on + strand at 103.137 kb on - strand at 103.137 kb on - strand at 103.208 kb on + strand at 103.208 kb on + strand at 103.209 kb on - strand at 103.250 kb on + strand at 103.251 kb on - strand at 103.251 kb on - strand at 103.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 99,850 + GFF90 0.52 -0.4 100,489 + -0.1 100,837 + -0.1 100,837 + -0.5 100,837 + +0.1 101,156 - GFF91 0.29 -0.1 101,260 + GFF91 0.35 +0.3 101,260 + GFF91 0.35 +0.6 101,360 - GFF91 0.42 -0.6 101,477 - GFF91 0.49 -0.5 101,513 - GFF91 0.52 -0.3 102,064 + GFF91 0.87 -0.1 102,065 - GFF91 0.87 +0.1 102,065 - GFF91 0.87 +0.2 102,085 + GFF91 0.88 +0.0 102,085 + GFF91 0.88 -0.4 102,086 - GFF91 0.89 -0.7 102,086 - GFF91 0.89 -0.2 102,804 + GFF92 0.87 +0.1 102,805 - GFF92 0.87 -0.3 102,805 - GFF92 0.87 -0.6 102,971 - +0.8 103,049 - -0.3 103,082 + -1.0 103,092 + -0.4 103,092 + -0.2 103,092 + -0.2 103,092 + -0.2 103,136 + -1.9 103,136 + -0.2 103,136 + +1.2 103,137 - -0.3 103,137 - +0.2 103,208 + -0.3 103,208 + -1.0 103,209 - -1.5 103,250 + -0.4 103,251 - -0.2 103,251 - -0.6 103,251 - -0.4
Or see this region's nucleotide sequence