Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF880 and GFF881 are separated by 156 nucleotides GFF881 and GFF882 are separated by 208 nucleotides
GFF880 - Electron transfer flavoprotein, alpha subunit, at 605,462 to 606,400
GFF880
GFF881 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 606,557 to 608,092
GFF881
GFF882 - Enoyl-CoA hydratase (EC 4.2.1.17), at 608,301 to 609,089
GFF882
Position (kb) 606
607
608
609 Strain fitness (log2 ratio) -1
0
1
2
3 at 605.655 kb on + strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.720 kb on + strand, within GFF880 at 605.853 kb on - strand, within GFF880 at 605.853 kb on - strand, within GFF880 at 606.230 kb on + strand, within GFF880 at 606.230 kb on + strand, within GFF880 at 606.231 kb on - strand, within GFF880 at 606.344 kb on + strand at 606.398 kb on + strand at 606.398 kb on + strand at 606.399 kb on - strand at 606.399 kb on - strand at 606.641 kb on + strand at 606.642 kb on - strand at 606.642 kb on - strand at 606.642 kb on - strand at 606.726 kb on + strand, within GFF881 at 606.733 kb on + strand, within GFF881 at 606.734 kb on - strand, within GFF881 at 606.734 kb on - strand, within GFF881 at 606.830 kb on + strand, within GFF881 at 606.831 kb on - strand, within GFF881 at 607.049 kb on + strand, within GFF881 at 607.049 kb on + strand, within GFF881 at 607.050 kb on - strand, within GFF881 at 607.050 kb on - strand, within GFF881 at 607.076 kb on - strand, within GFF881 at 607.391 kb on + strand, within GFF881 at 607.392 kb on - strand, within GFF881 at 607.454 kb on + strand, within GFF881 at 607.455 kb on - strand, within GFF881 at 607.484 kb on + strand, within GFF881 at 607.484 kb on + strand, within GFF881 at 607.485 kb on - strand, within GFF881 at 607.485 kb on - strand, within GFF881 at 607.655 kb on + strand, within GFF881 at 607.655 kb on + strand, within GFF881 at 607.656 kb on - strand, within GFF881 at 607.766 kb on + strand, within GFF881 at 607.857 kb on + strand, within GFF881 at 608.060 kb on + strand at 608.072 kb on + strand at 608.073 kb on - strand at 608.090 kb on + strand at 608.090 kb on + strand at 608.090 kb on + strand at 608.090 kb on + strand at 608.091 kb on - strand at 608.176 kb on + strand at 608.177 kb on - strand at 608.177 kb on - strand at 608.177 kb on - strand at 608.199 kb on - strand at 608.715 kb on + strand, within GFF882 at 608.715 kb on + strand, within GFF882 at 608.716 kb on - strand, within GFF882 at 608.716 kb on - strand, within GFF882 at 608.717 kb on + strand, within GFF882 at 608.717 kb on + strand, within GFF882 at 608.718 kb on - strand, within GFF882 at 608.852 kb on - strand, within GFF882 at 608.892 kb on + strand, within GFF882 at 608.898 kb on - strand, within GFF882 at 608.898 kb on - strand, within GFF882 at 608.898 kb on - strand, within GFF882 at 608.958 kb on + strand, within GFF882 at 609.087 kb on + strand at 609.088 kb on - strand at 609.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 605,655 + GFF880 0.21 +0.1 605,656 - GFF880 0.21 +0.3 605,656 - GFF880 0.21 -0.7 605,656 - GFF880 0.21 +1.2 605,656 - GFF880 0.21 +1.2 605,720 + GFF880 0.27 -0.0 605,853 - GFF880 0.42 +1.1 605,853 - GFF880 0.42 -0.4 606,230 + GFF880 0.82 +0.3 606,230 + GFF880 0.82 -0.5 606,231 - GFF880 0.82 -0.2 606,344 + -0.6 606,398 + -0.1 606,398 + +3.0 606,399 - -0.4 606,399 - +0.4 606,641 + +0.2 606,642 - +0.5 606,642 - +0.6 606,642 - -0.2 606,726 + GFF881 0.11 -1.6 606,733 + GFF881 0.11 -0.2 606,734 - GFF881 0.12 +0.9 606,734 - GFF881 0.12 -1.1 606,830 + GFF881 0.18 -0.0 606,831 - GFF881 0.18 +2.5 607,049 + GFF881 0.32 +0.3 607,049 + GFF881 0.32 -0.3 607,050 - GFF881 0.32 +0.6 607,050 - GFF881 0.32 +1.0 607,076 - GFF881 0.34 +0.1 607,391 + GFF881 0.54 +0.6 607,392 - GFF881 0.54 +1.2 607,454 + GFF881 0.58 -0.6 607,455 - GFF881 0.58 -0.5 607,484 + GFF881 0.60 -1.3 607,484 + GFF881 0.60 -0.1 607,485 - GFF881 0.60 -0.1 607,485 - GFF881 0.60 +0.2 607,655 + GFF881 0.71 -0.2 607,655 + GFF881 0.71 -0.0 607,656 - GFF881 0.72 +0.5 607,766 + GFF881 0.79 +0.6 607,857 + GFF881 0.85 +0.1 608,060 + +0.5 608,072 + +0.9 608,073 - +0.9 608,090 + +0.1 608,090 + +0.6 608,090 + -0.2 608,090 + -0.1 608,091 - +0.8 608,176 + +1.4 608,177 - +0.1 608,177 - +0.2 608,177 - -0.7 608,199 - -1.3 608,715 + GFF882 0.52 -0.4 608,715 + GFF882 0.52 +1.2 608,716 - GFF882 0.53 -0.7 608,716 - GFF882 0.53 -1.4 608,717 + GFF882 0.53 +0.0 608,717 + GFF882 0.53 +0.6 608,718 - GFF882 0.53 +0.1 608,852 - GFF882 0.70 -0.3 608,892 + GFF882 0.75 -0.9 608,898 - GFF882 0.76 -0.6 608,898 - GFF882 0.76 -0.2 608,898 - GFF882 0.76 +0.4 608,958 + GFF882 0.83 -0.2 609,087 + +0.0 609,088 - +1.1 609,088 - -1.3
Or see this region's nucleotide sequence