Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF812 and GFF813 are separated by 14 nucleotides GFF813 and GFF814 are separated by 59 nucleotides GFF814 and GFF815 are separated by 41 nucleotides
GFF812 - hypothetical protein, at 507,174 to 507,476
GFF812
GFF813 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 507,491 to 508,330
GFF813
GFF814 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 508,390 to 509,418
GFF814
GFF815 - FIG015547: peptidase, M16 family, at 509,460 to 510,911
GFF815
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1 at 507.455 kb on + strand at 508.366 kb on + strand at 508.366 kb on + strand at 508.367 kb on - strand at 508.367 kb on - strand at 508.368 kb on + strand at 509.430 kb on + strand at 509.430 kb on + strand at 509.430 kb on + strand at 509.447 kb on + strand at 509.447 kb on + strand at 509.448 kb on - strand at 509.459 kb on + strand at 509.460 kb on - strand at 509.826 kb on + strand, within GFF815 at 509.827 kb on - strand, within GFF815 at 509.827 kb on - strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.306 kb on + strand, within GFF815 at 510.307 kb on - strand, within GFF815 at 510.400 kb on - strand, within GFF815
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 507,455 + +0.0 508,366 + -1.2 508,366 + +0.1 508,367 - -0.3 508,367 - -1.2 508,368 + +0.4 509,430 + +0.2 509,430 + -0.4 509,430 + -0.1 509,447 + +0.1 509,447 + -0.2 509,448 - +1.0 509,459 + +0.3 509,460 - +0.6 509,826 + GFF815 0.25 -1.9 509,827 - GFF815 0.25 +0.2 509,827 - GFF815 0.25 +0.3 510,012 + GFF815 0.38 -0.0 510,012 + GFF815 0.38 -0.3 510,012 + GFF815 0.38 +1.5 510,108 + GFF815 0.45 +0.1 510,108 + GFF815 0.45 +0.0 510,108 + GFF815 0.45 +0.5 510,108 + GFF815 0.45 -0.2 510,109 - GFF815 0.45 -0.1 510,109 - GFF815 0.45 -0.2 510,109 - GFF815 0.45 +1.5 510,109 - GFF815 0.45 -0.0 510,109 - GFF815 0.45 +0.2 510,109 - GFF815 0.45 -1.1 510,306 + GFF815 0.58 +0.5 510,307 - GFF815 0.58 -1.0 510,400 - GFF815 0.65 -0.3
Or see this region's nucleotide sequence