Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF718 and GFF719 are separated by 15 nucleotides GFF719 and GFF720 are separated by 51 nucleotides GFF720 and GFF721 are separated by 17 nucleotides GFF721 and GFF722 are separated by 7 nucleotides
GFF718 - Fe-S oxidoreductase-like protein in Rubrerythrin cluster, at 398,441 to 399,799
GFF718
GFF719 - Hypothetical protein i Rubrerythrin cluster, at 399,815 to 400,405
GFF719
GFF720 - UPF0246 protein YaaA, at 400,457 to 401,275
GFF720
GFF721 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 401,293 to 402,177
GFF721
GFF722 - NADPH dependent preQ0 reductase (EC 1.7.1.13), at 402,185 to 403,036
GFF722
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1 at 399.797 kb on + strand at 399.798 kb on - strand at 399.798 kb on - strand at 399.866 kb on + strand at 399.980 kb on + strand, within GFF719 at 400.106 kb on + strand, within GFF719 at 400.106 kb on + strand, within GFF719 at 400.106 kb on + strand, within GFF719 at 400.200 kb on - strand, within GFF719 at 400.200 kb on - strand, within GFF719 at 400.200 kb on - strand, within GFF719 at 400.403 kb on + strand at 400.404 kb on - strand at 400.404 kb on - strand at 400.535 kb on + strand at 400.760 kb on + strand, within GFF720 at 400.761 kb on - strand, within GFF720 at 400.761 kb on - strand, within GFF720 at 400.761 kb on - strand, within GFF720 at 400.841 kb on + strand, within GFF720 at 400.842 kb on - strand, within GFF720 at 400.842 kb on - strand, within GFF720 at 400.842 kb on - strand, within GFF720 at 401.021 kb on + strand, within GFF720 at 401.022 kb on - strand, within GFF720 at 401.022 kb on - strand, within GFF720 at 401.022 kb on - strand, within GFF720 at 401.099 kb on + strand, within GFF720 at 401.099 kb on + strand, within GFF720 at 401.100 kb on - strand, within GFF720 at 401.100 kb on - strand, within GFF720 at 401.151 kb on - strand, within GFF720 at 401.866 kb on + strand, within GFF721 at 401.867 kb on - strand, within GFF721 at 401.867 kb on - strand, within GFF721 at 401.867 kb on - strand, within GFF721 at 401.884 kb on + strand, within GFF721 at 401.885 kb on - strand, within GFF721 at 401.896 kb on + strand, within GFF721 at 401.897 kb on - strand, within GFF721 at 401.903 kb on - strand, within GFF721 at 401.977 kb on + strand, within GFF721 at 401.978 kb on - strand, within GFF721 at 401.978 kb on - strand, within GFF721 at 402.070 kb on + strand, within GFF721 at 402.070 kb on + strand, within GFF721 at 402.233 kb on + strand at 402.233 kb on + strand at 402.233 kb on + strand at 402.234 kb on - strand at 402.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 399,797 + -0.0 399,798 - -0.1 399,798 - -0.2 399,866 + -0.2 399,980 + GFF719 0.28 +1.1 400,106 + GFF719 0.49 -0.1 400,106 + GFF719 0.49 +0.7 400,106 + GFF719 0.49 +0.0 400,200 - GFF719 0.65 +1.0 400,200 - GFF719 0.65 -0.4 400,200 - GFF719 0.65 +0.3 400,403 + -0.0 400,404 - +0.3 400,404 - +0.2 400,535 + -2.1 400,760 + GFF720 0.37 +1.3 400,761 - GFF720 0.37 -0.1 400,761 - GFF720 0.37 +0.5 400,761 - GFF720 0.37 -0.2 400,841 + GFF720 0.47 -0.1 400,842 - GFF720 0.47 +0.2 400,842 - GFF720 0.47 -0.3 400,842 - GFF720 0.47 +0.1 401,021 + GFF720 0.69 +0.0 401,022 - GFF720 0.69 +0.7 401,022 - GFF720 0.69 +0.6 401,022 - GFF720 0.69 +0.7 401,099 + GFF720 0.78 -0.3 401,099 + GFF720 0.78 -1.9 401,100 - GFF720 0.79 -1.1 401,100 - GFF720 0.79 +0.3 401,151 - GFF720 0.85 +0.1 401,866 + GFF721 0.65 -0.9 401,867 - GFF721 0.65 +1.3 401,867 - GFF721 0.65 -0.0 401,867 - GFF721 0.65 +0.1 401,884 + GFF721 0.67 -0.1 401,885 - GFF721 0.67 +0.2 401,896 + GFF721 0.68 -0.1 401,897 - GFF721 0.68 -0.3 401,903 - GFF721 0.69 +0.2 401,977 + GFF721 0.77 -0.3 401,978 - GFF721 0.77 -0.7 401,978 - GFF721 0.77 -0.2 402,070 + GFF721 0.88 -0.3 402,070 + GFF721 0.88 +0.7 402,233 + -0.7 402,233 + -0.4 402,233 + +0.9 402,234 - -0.5 402,246 - +0.2
Or see this region's nucleotide sequence