Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF70

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF68 and GFF69 overlap by 4 nucleotidesGFF69 and GFF70 overlap by 1 nucleotidesGFF70 and GFF71 overlap by 4 nucleotides GFF68 - Predicted secretion system X transmembrane protein 1, at 69,053 to 69,577 GFF68 GFF69 - Predicted secretion system X transmembrane protein 2, at 69,574 to 70,113 GFF69 GFF70 - Predicted secretion system X translation initiation factor, at 70,113 to 70,625 GFF70 GFF71 - Predicted secretion system X protein GspD-like, at 70,622 to 72,694 GFF71 Position (kb) 70 71Strain fitness (log2 ratio) -1 0 1at 70.096 kb on + strandat 70.534 kb on - strand, within GFF70at 70.534 kb on - strand, within GFF70at 70.575 kb on + strandat 70.575 kb on + strandat 70.576 kb on - strandat 70.807 kb on + strandat 70.808 kb on - strandat 70.811 kb on + strandat 70.812 kb on - strandat 70.904 kb on + strand, within GFF71

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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70,096 + -0.4
70,534 - GFF70 0.82 +0.0
70,534 - GFF70 0.82 -0.7
70,575 + -0.3
70,575 + -0.2
70,576 - -0.0
70,807 + -0.3
70,808 - +0.6
70,811 + -0.2
70,812 - -0.2
70,904 + GFF71 0.14 -0.6

Or see this region's nucleotide sequence